BAC Information

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BAC

Clone NameMSMg01-417I13
Chromosome5 (Build37)
Map Location 61,186,812 - 61,187,262
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneLOC666597, EG666610, LOC100041524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417I13.T7 (MSMg01no417_i13.b1)MSMg01-417I13.TJ (MSMg01no417_i13.g1)
ACCAG513091AG513092
length728744
length of high quality
(start - end)
353 (78 - 430)570 (82 - 651)
definitionCHROMAT_FILE: MSMg01no417_i13.b1 PHD_FILE: MSMg01no417_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:26 2005CHROMAT_FILE: MSMg01no417_i13.g1 PHD_FILE: MSMg01no417_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCAATATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAT
CCGCGGAAATTCCCATTACAGAATAATTGGCTAGACTTCAAATATCAGGC
AGGATTTCCACTATGTTGAGAGGGTCTTATGTCCAATGAGGGAGCTTGAA
GTTATACATGCTACTGTTTACCAGATAGGCACATGTGCCATGATGGGTTC
AAAGGTGCCATAGCCTGGAAGGACTTTACTTCAGAATGTTGAATGGTGGC
TAGTCCTCAAAGTGAAAGATTTCAGATTGATTATAGCTTAAGGGCCTCTG
GACCCTGTGTCTGATGTTCATTCTGTCCTCTACAAAGAGGACTTAACTTG
AGACTCTTAAGGGGTCAATCAAGGGTAACCGCAAGAGCTTGGAACATTTT
GGGAATCTCAAAGATAATCCTGACTGACAACACTATATAAGACTGTCCAA
GTCTGATATTGGACTTTTTGCTAAATACTCTTTGGATCATGGACACAGCA
TTTGCATCCCAAATTAGACGTAATATAAGCTATATATGCATATTTATATA
CTGACTTACAGCTATTGTACGCATTTCCAGGCCTTCTAACTAGCAGCATG
ACTCTTTATGACTTTATTCATACATGCCCATTGCTATTGTTCCCCCCCCT
CCTCCCATTTATGACTATCCCTTCCCCCGTTTTTTCTACTTTCCCATCAT
ATTACTTGTACCTGATATACCAATTTTG
NGGCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGTTACAGAGCCAGTT
CCTGTCTCAAAAAATAGGTGTCTGTACATAATCACATACTTCATGTCCTC
AGAAAAATTCAAACTGCAAAGAAATGAGAAGAGACTACAGAACCATCAGT
ACCCCTGAAGCCAGAATCCTGACAATAAAAGCTCTACAGAAGACGGTTGA
GGTTTCAAACTGAAAGGCTCCTTGAGAATAGTCCCAGAATTTCTAACACA
GAGAAAAAGAAAAAGGAAAAGGTCTAATGGAAAGAAAAAGGGAAAGGAAA
AGGAAAAGGAAAGGGAAAGGGAAAAGGAAAAGGAAAAGGAAAGGGAAAGG
GAAGAGGAAGAGAAAAAGAAAAAGAAAGAGAAAGATAAAAAGAAAAAGAA
AAAGAAGAAAGAGAAAAAGAAAGAGAAAGAGAAAAAAAAGAAAAAAAAAG
AAAAAGAAAAAGAAAAAGAAAAAAAAAAGAAAAACAATCTTATCTAGAAT
ATCCCAATCGCCAATCACATTTCTTGTTATTAAACCTTAGGAATAAAGAC
CTGCTCTCCATATACAAACCCGTCTGGTGATGAAGCATGTTTAATTAATA
ATTGCCAAAATTTGAAAGAAACCAGGTTGTAAGCAAATTTCAAACTATTT
TCTACCCAGAAACAGATAAAGGAAATGGTTAGTACTCAGCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_i13.g1 MSMg01no417_i13.g1 CHROMAT_FILE:
MSMg01no417_i13.g1 PHD_FILE: MSMg01no417_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:26 2005
         (570 letters)



>mm_chr5_61186812_61187782
          Length = 971

 Score =  681 bits (352), Expect = 0.0
 Identities = 420/454 (92%), Gaps = 24/454 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggttacagagccagttcctgtctcaaaaaataggtg-tctgtacataatcacatact 59
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 451 ctgggttacagagccagttcctgtctcaaaaaataggtgttctgtacataatcacatact 392

                                                                       
Query: 60  tcatgtcctcagaaaaattcaaactgcaaagaaatgagaagagactacagaaccatcagt 119
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 391 tcatgtcctcagaaaaattcaagctgcaaagaaatgagaagagactaccgaaccatcagt 332

                                                                       
Query: 120 acccctgaagccagaatcctgacaataaaagctctacagaagacggttgaggtttcaaac 179
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 331 acccctgaagccagaatcctgacaataagagctctacagaagatggttgaggtttcaaac 272

                                                                       
Query: 180 tgaaaggctccttgagaatagtcccagaatttctaacacagagaaaaagaaaaaggaaaa 239
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 271 tgaaaggctccttgagaatagtcccagaatttctaacatagagaaaaagaaaaaggaaaa 212

                                                                       
Query: 240 ggtctaatggaaagaaaaagggaaaggaaaaggaaaaggaaagggaaagggaaaaggaaa 299
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gggctaatggaaagaaaaagggaaaggaaaaggaaaaggaaagggaaagggaaaaggaaa 152

                                                                       
Query: 300 aggaaaaggaaa------------gggaaagggaagaggaagagaaaaagaaaaagaaag 347
           ||||||||||||            |||||||||||||||||||| |||||||||||||||
Sbjct: 151 aggaaaaggaaaaggaaaaggaaagggaaagggaagaggaagagtaaaagaaaaagaaag 92

                                                                       
Query: 348 agaaagataaaaagaaaaagaaa---aagaagaaagagaaaaagaaagagaaagagaaaa 404
           ||||||| |||||||||||||||   || |||||| ||||||||||   |||||||||||
Sbjct: 91  agaaagagaaaaagaaaaagaaagataaaaagaaaaagaaaaagaa---gaaagagaaaa 35

                                             
Query: 405 a-aaaga-aaa---aaaaagaaaaagaaaaagaa 433
           | ||||| |||   ||||||||||||||||||||
Sbjct: 34  agaaagagaaagagaaaaagaaaaagaaaaagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)