BAC Information

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BAC

Clone NameMSMg01-417N24
Chromosome5 (Build37)
Map Location 12,010,132 - 12,178,843
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417N24.T7 (MSMg01no417_n24.b1)MSMg01-417N24.TJ (MSMg01no417_n24.g1)
ACCAG513351AG513352
length783800
length of high quality
(start - end)		526 (44 - 569)468 (72 - 539)
definitionCHROMAT_FILE: MSMg01no417_n24.b1 PHD_FILE: MSMg01no417_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:54 2005CHROMAT_FILE: MSMg01no417_n24.g1 PHD_FILE: MSMg01no417_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,178,322 - 12,178,843)(12,010,132 - 12,010,599)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAAATTAATAGTAAAAATATAAATAGCATATTGGCCTGGAACATTA
ATACACATAGTAATAAAATTTAAAACTCCACACTTTTAGCTTCAGGATAC
ATCTAAAACAATGACTAATCTAAGAGATGAGATTATAAATCTTAGAATCA
CATTCCAGGAATTTTCCTGTCCCAACAAGACACCATCAATCTACATTAAA
ACAATAAATTTCAAAATTGGCAAGTAATAATGCTGTAACCATAGTGTTTT
GAAAACTGGTCATGATATCCCTTTAATTATATCACAGACAAATTTACCAA
TTCTGAATTGGTGTATCTGAGTATTTTCCTTACTGTCTGTATGGTGGAAG
AAGTCAGTTTCAGATGAAAATCCCATCAGTGTATTCAAAGATTAAAATAG
AAAAAAGAAAAGAAAAGAAAGGATTCTAAAATAAGCACTTTTGTCCAATA
ACTTGAGTAGAAGGGTCACATACAATTTCTTTGATAAAAATCCATTAACT
CAAATTTCCCCTTCTTGGCTTCATACTGACATTTGCTTGTATTTGTCATT
TGACAATCTATTCAGTACACAGATGCTCTNAACCTATTTCTCACCCTGCG
TTCTTTTTCCATTTTTGGTTGGTATTTCATGGTTGGGNCGGGTTGTGNTG
TTTTGAAAAAGGTTTTATTAAGGAATCCTGGCGTTTTGGAACCCCGGCTA
AACCAAATAGACTCCCTGGCCCGCTCACGGTTC

ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAGGTAGGGCAGTCTTTGATGGCCTTTC
CTTCAGTCTTTGCTCCTCTCTTTGTCCCTGCATTTCCTTTAGACAGGAGT
AATTCTGGATTAGACATTTCTCAACCAATAATCTCCTTTTAATACATAGC
TTTCAGCGATCCGACTATAGTTTTTCATTACAGAGTAAGTCAATAAGGAC
AGAAATACTCAAGCCTTTACTCAAAGTAAGAGACATATCAGGTGTGAATA
ACTATCAAATGCCTTGAGGATGCAAGGAAAGAGGTGGCAATGGAAATGCA
TATTGATAACACACAGAGGAAACAAAGGTTCCAGTCTCTTTTATCTTCCT
GAAACGTTGTTTATTATCTGTGTGATTAACTTTTAAGTTTGAAGTGAGCC
TCTCATACAGATGAGAACATGCTCAAGATTATTTAAGACTTGTAATGCAA
TGCTTGCCAATAGCTATTATGAAGCTAANATATCTCAAGACCCAGTGGAG
CAAAATGATGCACATGAGCAAGCATGACTTTTGTGGGTTGGCATTCCTTA
TTTAATGTATACAAACATAAATTGAATAACTCCTTGAATGAAAATTAATC
TTACCACCTTCTTTTATATGTAACATATTATTTCCTTAAGCTTAGTTTAA
TCCTAATTATGGGAATTGGTAGGCGGCGCAACTAATGAATATGTTTCCCG
GAAGGGCGAAAACTCGCCAAACCATATTCTCTGGGCGGGGTGTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_n24.b1 MSMg01no417_n24.b1 CHROMAT_FILE:
MSMg01no417_n24.b1 PHD_FILE: MSMg01no417_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:54 2005
         (526 letters)



>mm_chr5_12178118_12179043
          Length = 926

 Score =  986 bits (510), Expect = 0.0
 Identities = 519/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaaattaatagtaaaaatataaatagcatattggcctggaacattaatacaca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaattcaaaaattaaaagtaaaaatataaatagcatattggcctggaacattaatacaca 667

                                                                       
Query: 65  tagtaataaaatttaaaactccacacttttagcttcaggatacatctaaaacaatgacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tagtaataaaatttaaaactccacacttttagcttcaggatacatctaaaacaatgacta 607

                                                                       
Query: 125 atctaagagatgagattataaatcttagaatcacattccaggaattttcctgtcccaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atctaagagatgagattataaatcttagaatcacattccaggaattttcctgtcccaaca 547

                                                                       
Query: 185 agacaccatcaatctacattaaaacaataaatttcaaaattggcaagtaataatgctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agacaccatcaatctacattaaaacaataaatttcaaaattggcaagtaataatgctgta 487

                                                                       
Query: 245 accatagtgttttgaaaactggtcatgatatccctttaattatatcacagacaaatttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 accatagtgttttgaaaactggtcatgatatccctttaattatatcacagacaaatttac 427

                                                                       
Query: 305 caattctgaattggtgtatctgagtattttccttactgtctgtatggtggaagaagtcag 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caattttgaattggtgtatctgagtattttccttactgtctgtatggtggaagaagtcag 367

                                                                       
Query: 365 tttcagatgaaaatcccatcagtgtattcaaagattaaaatagaaaaaagaaaagaaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tttcagatgaaaatcccatcagtgtattcaaagattaaaatagaaaaaagaaaagaaaag 307

                                                                       
Query: 425 aaaggattctaaaataagcacttttgtccaataacttgagtagaagggtcacatacaatt 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 306 aaaggattctaaaataagcacttttgtccaattacttgagtagaagggtcacatacaatt 247

                                                     
Query: 485 tctttgataaaaatccattaactcaaatttccccttcttggc 526
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tctttgataaaaatccattaactcaaatttccccttcttggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_n24.g1 MSMg01no417_n24.g1 CHROMAT_FILE:
MSMg01no417_n24.g1 PHD_FILE: MSMg01no417_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:54 2005
         (468 letters)



>mm_chr5_12009932_12010799
          Length = 868

 Score =  876 bits (453), Expect = 0.0
 Identities = 464/468 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggtagggcagtctttgatggcctttccttcagtctttgctcctctctttgtccctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggtagggcagtctttgatggcctttccttcagtctttgctcctctctttgtccctgc 260

                                                                       
Query: 61  atttcctttagacaggagtaattctggattagacatttctcaaccaataatctcctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcctttagacaggagtaattctggattagacatttctcaaccaataatctcctttta 320

                                                                       
Query: 121 atacatagctttcagcgatccgactatagtttttcattacagagtaagtcaataaggaca 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacgtagctttcagcgatccgactatagtttttcattacagagtaagtcaataaggaca 380

                                                                       
Query: 181 gaaatactcaagcctttactcaaagtaagagacatatcaggtgtgaataactatcaaatg 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatactcaatcctttactcaaagtaagagacatatcaggtgtgaataactatcaaatg 440

                                                                       
Query: 241 ccttgaggatgcaaggaaagaggtggcaatggaaatgcatattgataacacacagaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgaggatgcaaggaaagaggtggcaatggaaatgcatattgataacacacagaggaa 500

                                                                       
Query: 301 acaaaggttccagtctcttttatcttcctgaaacgttgtttattatctgtgtgattaact 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 acaaaggttccagtctcttttatcttcctgaaacgttgcttattatctgtgtgattaact 560

                                                                       
Query: 361 tttaagtttgaagtgagcctctcatacagatgagaacatgctcaagattatttaagactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaagtttgaagtgagcctctcatacagatgagaacatgctcaagattatttaagactt 620

                                                           
Query: 421 gtaatgcaatgcttgccaatagctattatgaagctaanatatctcaag 468
           ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 gtaatgcaatgcttgccaatagctattatgaagctaaaatatctcaag 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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