Query= MSMg01no418_c22.b1 MSMg01no418_c22.b1 CHROMAT_FILE:
MSMg01no418_c22.b1 PHD_FILE: MSMg01no418_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:19 2005
(365 letters)
>mm_chr5_15529262_15530029
Length = 768
Score = 613 bits (317), Expect = e-180
Identities = 355/369 (96%), Gaps = 4/369 (1%)
Strand = Plus / Plus
Query: 1 cttttctcctctttcttccctctctcccc-ctctccctttcctttctcctttctcttcta 59
|||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||
Sbjct: 200 cttttctcctctttctcccctctctcccctctctccctttcctctctcctttctctccta 259
Query: 60 tcttgagatagggggtgaaaccaggggagataaaggataaaagaacccacaaataataaa 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcttgtgatagggggtgaaaccaggggagataaaggataaaagaacccacaaataataaa 319
Query: 120 gggcaggtacactataggatttcataagtatttaaaaataatatcagagagac---gttc 176
|| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 ggtcaggcacactataggatttcataagtatttaaaaataatatcagagagacaatgttc 379
Query: 177 taaaatattctgtatatattagatataacatatacatattttcatccttgaagacaccta 236
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 380 taaaatattctgtatacattagatataatatatacatattttcatccttgaagacacata 439
Query: 237 gtgacaggtgaggcacatgttgtgtgacctagtaaatttaagtctgaatcccctccagta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgacaggtgaggcacatgttgtgtgacctagtaaatttaagtctgaatcccctccagta 499
Query: 297 attgtggaacatattttacaccccctttatcacaagaaaggagactttattgagaaatgc 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 attgtggaacatattttacaccccctttatcacaagaaaggagacttcattgagaaatgc 559
Query: 357 acaagatat 365
|||||||||
Sbjct: 560 acaagatat 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 768
Length adjustment: 9
Effective length of query: 356
Effective length of database: 759
Effective search space: 270204
Effective search space used: 270204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_c22.g1 MSMg01no418_c22.g1 CHROMAT_FILE:
MSMg01no418_c22.g1 PHD_FILE: MSMg01no418_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:19 2005
(478 letters)
>mm_chr5_15664392_15665270
Length = 879
Score = 857 bits (443), Expect = 0.0
Identities = 470/479 (98%), Gaps = 1/479 (0%)
Strand = Plus / Minus
Query: 1 tgatatatgacatggaagtcaaataaaagcagtagagatatattgaaaaaagacagtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgatatatgacatggaagtcaaataaaagcagtagagatatattgaaaaaagacagtcct 620
Query: 61 atcatttcaatcagtaatattcaaatatatttccccttacacaaatagtattttctaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atcatttcaatcagtaatattcaaatatatttccccttacacaaatagtattttctaaat 560
Query: 121 ttctaagtattctgcttcctgggttatgaattaatttttgactagctcttttcaaaagaa 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttctaagtattctgcttcctgggctatgaattaatttttgactagctcttttcaaaagaa 500
Query: 181 cttttgagaacaatcaaacaatcataagcatttctttaaagagctttaaacgcaaaatat 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 499 cttttgagaacaatcaaacaatcataagcatttctttaaagagctttgggcgcaaaatct 440
Query: 241 gaggcagcacaggtctgttcatttaagactccaaggctgctgacattcaaatttaaatag 300
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 439 gaggcagcacagggctgttcatttaagacgccaaggctgctgacattcaaatttaaatag 380
Query: 301 gcagtgttgacttaaagaattcattctaacaagttctaaaacaatgcctttgatggtgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcagtgttgacttaaagaattcattctaacaagttctaaaacaatgcctttgatggtgta 320
Query: 361 gatcaagatttttctc-ttaataaagggcaacagatataaagagcaggctaattcaagaa 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gatcaagatttttctctttaataaagggcaacagatataaagagcaggctaattcaagaa 260
Query: 420 aatactcattttataagattttgattaatgtacagttaatacccaataagggctggcaa 478
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatactcattttatgagattttgattaatgtacagttaatacccaataagggctggcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space: 406692
Effective search space used: 406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
