Query= MSMg01no418_e15.b1 MSMg01no418_e15.b1 CHROMAT_FILE:
MSMg01no418_e15.b1 PHD_FILE: MSMg01no418_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:27 2005
(447 letters)
>mm_chr5_67579373_67580219
Length = 847
Score = 590 bits (305), Expect = e-173
Identities = 438/549 (79%), Gaps = 102/549 (18%)
Strand = Plus / Minus
Query: 1 cccagaatttttagcctgcctcctagcctatagatttcagagttttccaggcctcacatt 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 cccagaatttttagcctggctcctagcctatagatttcagagttttccaggcctcacagt 502
Query: 61 tacatgaaccgattccttagcaccgtctggtctccgtctctcctcatccgccgtgcctat 120
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 501 tacatgaaccgattccttagcaccgtctggtctccatctctcctcatccgccatgcctat 442
Query: 121 gctaccgtctccccgttgctggctggatctcagggatcaacgtgatgactcttctgttat 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gctaccgtctccccgttgctggctggatctcagggatcaacgtgatgacttttctgttat 382
Query: 181 gttttcctaaactccacccatctactccgctcacgtgctccttcccttacacatcgtcta 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttcctaaactccacccatctgttccgctcacgtgctccttcccttacacatcgtcta 322
Query: 241 aggatgctttggagatacgatagtggg-----------------tcg------------- 270
||||||||||||||||||||||||||| |||
Sbjct: 321 aggatgctttggagatacgatagtgggacagagcagtggcgacatcgtctaaggatgctt 262
Query: 270 ------------------------------------------------------------ 270
Sbjct: 261 tggagatatgagagtgggacggagcaggggcgacatcgtctaaggatgctttggagatac 202
Query: 271 ------------gagcaggggcgagaggaccacaggatgtgcgtagcccaggacactggt 318
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatagtgggacggagcaggggcgagaggaccacaggatgtgcgtagcccaggacactggt 142
Query: 319 tttcaaaccctttccaggaaaggcttactgatctctgttatagagaacagccataatgaa 378
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tttcaaaccctttcctggaaaggcttactgatctctgttatagagaacagccataatgaa 82
Query: 379 ggttttgttactactcctgcattactttttggccatggaacacggacagctagtaggtta 438
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 81 ggttttgttactactcctgcattactttttggccatggaacacggccagctagtaggtta 22
Query: 439 tgcagtctt 447
|||||||||
Sbjct: 21 tgcagtctt 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_e15.g1 MSMg01no418_e15.g1 CHROMAT_FILE:
MSMg01no418_e15.g1 PHD_FILE: MSMg01no418_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:27 2005
(405 letters)
>mm_chr5_67364662_67365466
Length = 805
Score = 721 bits (373), Expect = 0.0
Identities = 397/405 (98%)
Strand = Plus / Plus
Query: 1 ctttgcagaaaacaaacaacaacactttcagccaaaccatttcctgtacccgaatttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgcagaaaacaaacaacaacactttcagccaaaccatttcctgtacccgaatttcag 260
Query: 61 atgctcattgacctctctggcatgcattagaagtggatgctggatggctcttgttttcaa 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctcattgaccgctctggcatgcattagaagtggatgctggatggctcttgttttcaa 320
Query: 121 aacaaagggaggcaagaactatgcacagggggtggagggagatacaatcatgagttggta 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaagggaggcgagaactatgcacagggggtggagggagatacaatcatgagttggta 380
Query: 181 tggacagcagcacaaagactgtcccagatccaaaacagggaaaaccccatggagaagata 240
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 381 tggacagcagcacaaagactgtcccagatccagaactgggaaaaccccatggagaagata 440
Query: 241 taacctctttttagaccaacacttaataaagtccaactggccacttctctaaattctgtc 300
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 taacctcttgggagaccaacacttagtaaagtccaactggccacttctctaaattctgtc 500
Query: 301 attctcatctgtctctgctaactagattataattcacatcttcaccatgttctggggcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attctcatctgtctctgctaactagattataattcacatcttcaccatgttctggggcag 560
Query: 361 ggttaaagagatacgaggacaaataatttttgatgcatgcttgtc 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttaaagagatacgaggacaaataatttttgatgcatgcttgtc 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
