Query= MSMg01no418_h24.b1 MSMg01no418_h24.b1 CHROMAT_FILE:
MSMg01no418_h24.b1 PHD_FILE: MSMg01no418_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:42 2005
(500 letters)
>mm_chr5_140989209_140990108
Length = 900
Score = 607 bits (314), Expect = e-178
Identities = 329/334 (98%)
Strand = Plus / Minus
Query: 4 ggaattcaaaggcagtctcggttacagagtccacctcaaaagagatggggcagactgagg 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggaattcaaaggcagcctgggttacagagtccacctcaaaagagatggggcagactgagg 275
Query: 64 aaaagccttaacggacagcatgcatgcagaccccagtccgagccttaacatccatataaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaagccttaacggacagcatgcatgcagaccccagtccgagccttaacatccatataaa 215
Query: 124 aagctactcttatgcccccagcccctcactggaggattctaggcaggggctcaactaagc 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aggctactcttatgcccccagcccctcactggaggattctaggcaggggctcaactaagc 155
Query: 184 tacatttctggccctccttttttggagatatggacttactatgtagccttggttgtaacc 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 154 tacatttctggccctccttttttggagctatggacttactatgtagccttggttgtaacc 95
Query: 244 ttctagttcaagaacagcctgagtaacatataaaaggctaggaggtgtggtgttgacggt 303
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 94 ttctagttcaagaacagcctgagtaacatataaaaggctaggaggtgtggtggtgacggt 35
Query: 304 ttgtagtcccatcgcgggaaagctgaaccaggag 337
||||||||||||||||||||||||||||||||||
Sbjct: 34 ttgtagtcccatcgcgggaaagctgaaccaggag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_h24.g1 MSMg01no418_h24.g1 CHROMAT_FILE:
MSMg01no418_h24.g1 PHD_FILE: MSMg01no418_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:43 2005
(307 letters)
>mm_chr5_140793236_140793941
Length = 706
Score = 470 bits (243), Expect = e-137
Identities = 288/309 (93%), Gaps = 12/309 (3%)
Strand = Plus / Plus
Query: 1 taggacagccaaggttacgagaga--cccccacctctacataaataagtaagtaagtaaa 58
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 208 taggacagccaaggttacgagagacccccccacctctacataaataagtaagtaagtaaa 267
Query: 59 gtgagcaagcttgaggccggtagaccaagagccagttaagcatctcccgggtcggccatt 118
||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 268 gtgagcaagcttgaggccggtagaccaag---------agcatctccagggtcggccatt 318
Query: 119 gagaaagcagctgaggttcggatggcaggaggctcgagggccatggtgagcagtgaggag 178
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 319 gagaaagcagctgaggttcggatggcaggaggctcgaaggccacggtgagcagtgaggag 378
Query: 179 atccttgcactgtgcatctaaacatctgaagggcgagctttcagagcaatgctctgatga 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 379 atccttgcactgtgcatctaaacatctgaagggcgagctttcagagcaatgctctgataa 438
Query: 239 ctgcaggacactgtctcttgggtgaagggttgcttttaacaaaatcttaaatgcttagtt 298
||||||||||| | ||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 439 ctgcaggacacag-ctcaagggggaagggttgctttcaacaaaatcttaaatgcttagtt 497
Query: 299 ttaccaata 307
|||||||||
Sbjct: 498 ttaccaata 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 706
Length adjustment: 9
Effective length of query: 298
Effective length of database: 697
Effective search space: 207706
Effective search space used: 207706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
