BAC Information

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BAC

Clone NameMSMg01-418M04
Chromosome5 (Build37)
Map Location 125,201,923 - 125,202,212
singlet/doubletsinglet
Overlap geneAtp6v0a2
Upstream geneKntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2
Downstream geneDnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418M04.T7 (MSMg01no418_m04.b1)MSMg01-418M04.TJ (MSMg01no418_m04.g1)
ACCAG514020AG514021
length789761
length of high quality
(start - end)
288 (70 - 357)321 (61 - 381)
definitionCHROMAT_FILE: MSMg01no418_m04.b1 PHD_FILE: MSMg01no418_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:03 2005CHROMAT_FILE: MSMg01no418_m04.g1 PHD_FILE: MSMg01no418_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCTGTAAATGACAGTCCTCCGTTGATCAGAGCGGGCTTGCTGCAG
CGTGCAATCATGCTATGCTGTCATCATTACTGAACTTGGAGGAGAGCAGA
CTGAAGGAGAAGGGAACAAACTTGGTGCCTGCACCAACGTAGAATTTGTT
CTGAAATTCTACCCTACAGAAAGAAAAATGAACACGTATTAAACACTATG
GACTGCACCCTGGAACTGTGAGTGACTTAATGTTTCTACACTTCCTTTTT
GGTTTTGTTTTGCTTTGTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATA
GCCCTGGCTGTCCTGGAACTCACTTTGTACACCATGCTGTTCTCGAACTC
GTAATTCTGCCTGCCTCTGCCTCCCGATTGCTGTTATTACATCTCTGCTT
CATCCTGCCAGGCTATTTGTTAATTTCCCCTTCCCACATCCTTCACCCTC
CTTTATCCCCTGATCACACTCGTTTCCGTCTCCCCACATCTCCCCCCTAC
GTGCTTTTCGATTCTCCCTACTCCCGTCCCTTTTATTCCTCCTCCCTTTT
CCACCCCACCCTGTATCCCCCCTCCTTCTTCCTTCACCCTTTTATCTCTT
CATCCCTTCTTCTCTTCCTTCATCTCTTACCTTGTCCTCCCATACCCCCT
CCCCTTCTCTTTTTTCTTCCTTCTTTTCCCTTTTTCCCCCCCCCCTTTCC
CCCCTATCCCCTTTATCCCCCTCCTTTTTCTCTCTTTCN
TGGCGGCCGCCTGGATGCAAACGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXGGCCGTCCCCAAACCCATGTACAGAAGCCACACGTGATGGCACAC
ATCTGTGCACATCTGTAATTCCAGCATCCCTACCGAGAAATGGGAGGCAA
GAACTGCCTGGAAACTTGAGGGCCAATGAGCCCAGACTACATCGCAGCAG
CAGAAAGGAGAAAGCCCTGGTCTCCGAGAGGTGGAAATCAAGACCCGATT
TCTCAAAATTGACCTCTGACCTCCATGGATATACACACACAATTTTGTAA
AAATTTATTTTAGAAACATTATTTTTGGGTGTGGGGATGTTTTGCCTGCA
CGTGCCTCTCTGCACCACGTGAGTGCCCACATAGATCAGAAGAACGTGTC
AGATCTCCTGGAACTGGGAGTTACAGAGAGCTGTGAGCCATCCTGTAGGG
TGTTTGAGTATTGACTTAGTGTCTTCCTCTATTGAATTCCTCCCATTTTT
ACACTAACTCCATACTTGTCTCTCCTCACAACTCCCGCGTTCCTCTTTCG
TTGCTGACTTTTTTTCTCTATCTCCTTTCAGACCCTTCTATCTCCCTGCT
GCCCTCATCTCTAGCTACATACGCCCCCAACTTCCCCTTTCATGCCCTCC
CCCAGCTATTAATCCCCCCTTTTATTTATCTCCCTTCCTTCTCTTAATAT
TAAAACTCTCTCACACTTCTAATGCTCTTAACAGTACACCCTCTGCCCAA
CTCCTCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_m04.b1 MSMg01no418_m04.b1 CHROMAT_FILE:
MSMg01no418_m04.b1 PHD_FILE: MSMg01no418_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:03 2005
         (288 letters)



>mm_chr5_125201771_125202458
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 286/290 (98%), Gaps = 2/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctccgttgatcagagcgggcttgctgcagcgtgcaatcatgctatgctgtcatcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcctccgttgatcagagcgggcttgctgcagcgtgcaatcatgctatgctgtcatcatta 383

                                                                       
Query: 61  ctgaacttggaggagagcagactgaaggagaagggaacaaacttggtgcctgcaccaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgaacttggaggagagcagactgaaggagaagggaacaaacttggtgcctgcaccaacg 323

                                                                       
Query: 121 tagaatttgttctgaaattctaccctacagaaagaaaaatgaacacgtattaaacactat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagaatttgttctgaaattctaccctacagaaagaaaaatgaacacgtattaaacactat 263

                                                                       
Query: 181 ggactgcaccctggaactgtgagtgacttaatgtttctacacttcctttttggttttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 ggactgcaccctggaactgtgagtgacttaatgtttctacacttcctttttggttttttt 203

                                                             
Query: 241 tt--gctttgttttgtttttttgagacagggtttctctgtatagccctgg 288
           ||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttttgttttgttttgtttttttgagacagggtttctctgtatagccctgg 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)