NCCTCTAAAATTGTGGGCGCCGATAAGAGCNCATAGGTCGGAGACAACGC
GGGATCNCGNGTACTCCCAAATAACGACCACGAGAAAAAGGTGATAAGTC
GTTTCCCCCACCTTGGGTCTCTACACTATATTCTTCTGTGATATTTTTTT
ATTGCTAGGAGGCTACAATAATAGCAATGATGGTTCCACCCCGTGACGAC
TCGCTGAAAATTTCTTCGCTGCTTAACTCATGTGTGCACCTCTCTAGAAC
CAAAAGTATAAGACATTCCCGTGCTCAGAAGATCTGGCCCTGCCCATGCT
CCTGATTTGATTTCATAAAAATTATCTTATTGCTCAGCCCTAAATGAACT
TCTATCATCCCATCCCACTGACACCCAAGGCTAAGAAGACATTAAAGAAG
AGATGGCAGAATATTTGGGAGAGAGGAAGATTAAAGAGCATCCCTGGAAA
TCAGTGTCTTCTGCGTATGACAAGGCTGTTGACTCGGGAGTTCGCAGCAT
CTGTGGTTGCCAAGCACAGGCAGGCCCTGCTGCAAGATCACGCCTATTTC
AAGGTCTCAAGAAAGGATTCCCTGGAAGGAGCTTTTTAAAAAACCTCTCC
CCTAAATTGTAAGAAACCCATTTGGCAACTTGGCGGGCCTTTCTTTTTTA
GGAGGGTTTTTGGAAAACAAATCCCCCCCCTTTCTTTTTTTTATTACCCC
CCTCCNTCTCCCTCNNNTTTNCCCCTTTTTCCCCCTTCN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATAGGTGTAGGGTGTTTCCCAAAGTTTAGGAGA
GTTTCTGGAACTATTTAATATCTCCACTACGGCAATAGGGCTGTAGTTTC
ATTTTTCTTTAAACCTTGGTTGCCTATGTGTCCTTATCTGCGTGAACTGG
CGTAAGCGGCTACAGTATCGCTGAATTGTTGGATTCCAAAGCTATCATGC
CTAAGGATCCTTAACTAGTGGTGTGCAATTATGCTTACTTGGGCATTTAT
AATTGATTAAGGTGTTCTTCCCCTAGCCGACCCATTGTTTCAGAAGTAAT
TTGCACATGATTATGGAAGCTTCCGTGTTACCTATTTATGCAACCTTTAA
CATGTTCCACACTAAAAAAAAAAAAAAAAGTGAAGTTCTTACAATCAATT
TGCCTTACATGGCTATAGTTTTCTATGAGAAAAGATTTCTTTTTTCATTT
TTTAAGGGGAGCAAAATAAAAGGCATGTAGATATCTTCTTACTGTTGTAT
AGTTTAGGGTGTGCGTCGGCAGGAGTTAATAAGGGTGAGCATACGAGAAC
AAGTGGGTTTTAATCTGAATCTTCAAGCCTGAAAATAAAGGGGGCCCGTT
TTTTTTTAATCCCAATAAAAAATTTGCAGGGGTGGTCCTTAATATAAATA
TTATTGGTACACTTTGTTTCTTCATACCTACATTCTCTTTCATTTTCTTT
CCTTCC

Query= MSMg01no419_d15.g1 MSMg01no419_d15.g1 CHROMAT_FILE:
MSMg01no419_d15.g1 PHD_FILE: MSMg01no419_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:40 2005
         (481 letters)



>mm_chr5_52459693_52460573
          Length = 881

 Score =  822 bits (425), Expect = 0.0
 Identities = 462/481 (96%), Gaps = 11/481 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataggtgtagggtgtttcccaaagtttaggagagtttctggaactatttaatatctcca 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 545 aataggtgtaaggtgtttcccaaagtttaggagagtttctggaactatttactatctcca 486

                                                                       
Query: 61  ctacggcaatagggctgtagtttcatttttctttaaaccttggttgcctatgtgtcctta 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctagggcaatagggctgtagtttcatttttctttaaaccttggttgcctatgtgtcctta 426

                                                                       
Query: 121 tctgcgtgaactggcgtaagcggctacagtatcgctgaattgttggattccaaagctatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tctgcgtgaactggcgtaagcggctacagtatcgctgaattgttggattccaaagctatc 366

                                                                       
Query: 181 atgcctaaggatccttaactagtggtgtgcaattatgcttacttgggcatttataattga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 365 atgcctaaggatccttaactagtggtgtgcaattatgcttacttgggcatttgtaattga 306

                                                                       
Query: 241 ttaaggtgttcttcccctagccgacccattgtttcagaagtaatttgcacatgattatgg 300
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 305 ttaaggtgttctccccctagccgacccattgtttcagaagtaatttgcgcatgattatgg 246

                                                                       
Query: 301 aagcttccgtgttacctatttatgcaacctttaacatgttccacactaaaaaaaaaaaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||           ||||
Sbjct: 245 aagcttccgtgttacctatttatgcaacctttaacatgttccaca-----------aaaa 197

                                                                       
Query: 361 aaagtgaagttcttacaatcaatttgccttacatggctatagttttctatgagaaaagat 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 196 aaagtgaagttcttacaatcaattcgccttacatggctatagttttctatgagaaaagat 137

                                                                       
Query: 421 ttcttttttcattttttaaggggagcaaaataaaaggcatgtagatatcttcttactgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 136 ttcttttttcattttttaaggggagcaaaataaaaggcatgtagataccttcttactgtt 77

            
Query: 481 g 481
           |
Sbjct: 76  g 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)