Query= MSMg01no419_j03.b1 MSMg01no419_j03.b1 CHROMAT_FILE:
MSMg01no419_j03.b1 PHD_FILE: MSMg01no419_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:09 2005
(413 letters)
>mm_chr5_80349360_80350172
Length = 813
Score = 752 bits (389), Expect = 0.0
Identities = 407/413 (98%)
Strand = Plus / Plus
Query: 1 agatcacacattccaagctgcctgaaattagagtgagttcaggacaagcctgggaaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agatcacacattccaagctgcctgaaattagagtgagttcaggacaaacctgggaaatgt 260
Query: 61 aatgagatcctgtcttagtttatgaagtgaagtaagatatagctgataacgatctgtgtt 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aatgagatcctgtcttagtttatgaagtgaaataagatatagctgataacgatctgtgtt 320
Query: 121 acagaatttgtctctaatgtgtgtaatccaaggttccatccatagaaatgaaaaaatatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaatttgtctctaatgtgtgtaatccaaggttccatccatagaaatgaaaaaatatc 380
Query: 181 tcaagttttgaggatattaaggtttttatggtagaagacaactggataaaactattcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaagttttgaggatattaaggtttttatggtagaagacaactggataaaactattcatg 440
Query: 241 tcatcataatattagagtaaaagagtatataaaaattagatatctattattagcaataat 300
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatcagaagaggagagtaaaagagtatataaaaattagatatctattattagcaataat 500
Query: 301 agttgatggtggctgcaaagtacttgttcctgaggaatgggcagaagaattactacacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttgatggtggctgcaaagtacttgttcctgaggaatgggcagaagaattactacacag 560
Query: 361 aagacaccacttaatattgattttaagactgctttatcagtcagctttctaca 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagacaccacttaatattgattttaagactgctttatcagtcagctttctaca 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_j03.g1 MSMg01no419_j03.g1 CHROMAT_FILE:
MSMg01no419_j03.g1 PHD_FILE: MSMg01no419_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:09 2005
(539 letters)
>mm_chr5_80521107_80522044
Length = 938
Score = 1004 bits (519), Expect = 0.0
Identities = 534/539 (99%), Gaps = 1/539 (0%)
Strand = Plus / Minus
Query: 1 agtagaaatgggtaaatgcatatgagcattacatttgggatatacaatttagaaaagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agtagaaatgggtaaatgcatatgagcattacatttgggatatacaatttagaaaagcta 679
Query: 61 taagatgtggagttacagtaatgacaatttttgcaaatggatagccatagtcatcaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 taagatgtggagttacagtaatgacaatttttgcaaatggatagccatagtcatcaggag 619
Query: 121 taactgtctatttcaaagcaaatttgagagttttggtcacatagttccatattatatgaa 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taactgtctaattcaaagcaaatttgagagttttggtcacatagttccatattatatgaa 559
Query: 181 atatattttgttttttatggtgcataattccatactatgtgaaatgtatgttagtgattt 240
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 558 atatattttg-tttttatggtgcataattccatactatatgaaatgtatgttagtgattt 500
Query: 241 tgatggtggttctaaatatttaaacttaaacaaaggacaaagttatcaaaacttgaacat 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgatggtggtactaaatatttaaacttaaacaaaggacaaagttatcaaaacttgaacat 440
Query: 301 atacttgatattgactacaacaagttattttaaaacattttacatgaccgtaaatattgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atacttgatattgactacaacaagttattttaaaacattttacatgaccgtaaatattgc 380
Query: 361 gaaacttcacttatttttacatttctcctttctttgaactacatctttctaaatattata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaaacttcacttatttttacatttctcctttctttgaactacatctttctaaatattata 320
Query: 421 tgaaaattctctaaaatatgcattctaaatttagaatcttgttggttatagagataaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgaaaattctctaaaatatgcattctaaatttagaatcttgttggttatagagataaaaa 260
Query: 481 tcgattggtatagcatacttacaaagactatttatataatagtgatttccttaaataat 539
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcgattggtatagtatacttacaaagactatttatataatagtgatttccttaaataat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space: 490912
Effective search space used: 490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
