Query= MSMg01no419_m07.b1 MSMg01no419_m07.b1 CHROMAT_FILE:
MSMg01no419_m07.b1 PHD_FILE: MSMg01no419_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:24 2005
(152 letters)
>mm_chr5_41986195_41986747
Length = 553
Score = 288 bits (149), Expect = 9e-83
Identities = 152/153 (99%), Gaps = 1/153 (0%)
Strand = Plus / Plus
Query: 1 ctattccatgtagtgtccatattaaatattacttctaggagttttggtgaaaa-tgctcc 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ctattccatgtagtgtccatattaaatattacttctaggagttttggtgaaaaatgctcc 260
Query: 60 tgaaattgacatgtgagctatgactctgtaaagtagatcaccttccatgagagtctgcaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaattgacatgtgagctatgactctgtaaagtagatcaccttccatgagagtctgcaa 320
Query: 120 ggagagaaggcacaggaaagaggtgtttgctcc 152
|||||||||||||||||||||||||||||||||
Sbjct: 321 ggagagaaggcacaggaaagaggtgtttgctcc 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 553
Length adjustment: 8
Effective length of query: 144
Effective length of database: 545
Effective search space: 78480
Effective search space used: 78480
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no419_m07.g1 MSMg01no419_m07.g1 CHROMAT_FILE:
MSMg01no419_m07.g1 PHD_FILE: MSMg01no419_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:24 2005
(491 letters)
>mm_chr5_42143921_42144811
Length = 891
Score = 787 bits (407), Expect = 0.0
Identities = 435/451 (96%), Gaps = 12/451 (2%)
Strand = Plus / Minus
Query: 1 ttctttgatactttctctacaagctgtgctggttctgtgagagtcccagaccctcaggca 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 ttctttgatactttctctacaagctgtgctggttctgtgagagtcccagagtctcaggca 386
Query: 61 aggttatcttcttaatgctacacgaggaaaggtagaaacacagttatcctgaaagaccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggttatcttcttaatgctacacgaggaaaggtagaaacacagttatcctgaaagaccct 326
Query: 121 cagtgcacagtgacttttagaaagccttcggccctagtaagtgagccatgtttggctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtgcacagtgacttttagaaagccttcggccctagtaagtgagccatgtttggctggg 266
Query: 181 atgccccctcaagccccagcaaagatgggacagtcactgaaccctatgcttcaggggcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgccccctcaagccccagcaaagatgggacagtcactgaaccctatgcttcaggggcag 206
Query: 241 ttggcgtc------tttttttccttgcggactgtccgataaatttgcaaagttaaacaag 294
||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttggcatcacaaaa------tgcttgcggactgtccgataaatttgcaaagttaaacaag 152
Query: 295 gatatgtgtcatttaaaattattttatgggcagggaaaaaaaatgggcagagagcaatag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gatatgtgtcatttaaaattattttatgggcagggaaaaaaaatgggcagagagcaatag 92
Query: 355 tgactgacatagtccaaacagtaagatcagtcagccttcatcagaaaccttcaaagcagc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tgactgacatagtccaaacagtaagatcagtcagccttcatcagaaaccttcaaagcagc 32
Query: 415 aagtcccccttatccttgatcatcacagctg 445
|||||||||||||||||||||||||||||||
Sbjct: 31 aagtcccccttatccttgatcatcacagctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
