Query= MSMg01no420_m05.b1 MSMg01no420_m05.b1 CHROMAT_FILE:
MSMg01no420_m05.b1 PHD_FILE: MSMg01no420_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:42 2005
(194 letters)
>mm_chr5_129735393_129735986
Length = 594
Score = 302 bits (156), Expect = 1e-86
Identities = 165/168 (98%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 21 ataaataaataaataaataaaa-taattttttatccatatgaccaaggacagaaaacaca 79
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 220 ataaataaataaataaataaaaataattttttatccatatgaccaaggacagaaaacaca 279
Query: 80 gaccatgaatcagagaactaagaactaaggatcatttgctacacagcagagtcccacata 139
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 280 gaccatgaatcagagaactaagatctaaggatcatttgctacacagcagagtcccacata 339
Query: 140 tcacaactagctgccacacacaaacacacacacacacacacacacaca 187
|||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 340 tcacaactagctgccacacacacacacacacacacacacacacacaca 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space: 108996
Effective search space used: 108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no420_m05.g1 MSMg01no420_m05.g1 CHROMAT_FILE:
MSMg01no420_m05.g1 PHD_FILE: MSMg01no420_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:42 2005
(581 letters)
>mm_chr5_129809259_129810239
Length = 981
Score = 1085 bits (561), Expect = 0.0
Identities = 576/581 (99%)
Strand = Plus / Minus
Query: 1 tcccctttctctctcctgatcagctacctttatacttattccatttcacagagactgcca 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 781 tcccctttctctctcctgatcagctacctttatacttattccatttcagagagactgcca 722
Query: 61 tggttgaaattgagtttgtagcctaaagcactgaacacatttatcaagcagggtgttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tggttgaaattgagtttgtagcctaaagcactgaacacatttatcaagcagggtgttaat 662
Query: 121 aagagaaatagtgtatgcggaggatgcttgcatatatatctgtgtctgttctcggaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagagaaatagtgtatgcggaggatgcttgcatatatatctgtgtctgttctcggaacag 602
Query: 181 gaaagcattctaaaggtacacaaagttggaaggcagggaagacctttttatagccaccgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaaagcattctaaaggtacacaaagttggaaggcagggaagacctttttatagccaccgt 542
Query: 241 ttgacattttctcccacagactttgtgctcccctcagggtatagactcgggaaggtgacc 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgacatcaactcccacagactttgtgctcccctcagggtatagactcgggaaggtgacc 482
Query: 301 agcagtgaccataaaggccagaggagggctagctcaggcatggtttggggtacagggaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agcagtgaccataaaggccagaggagggctagctcaggcatggtttggggtacagggaat 422
Query: 361 ggaggaggccagtagctgggggagctagtgctcacggagctattctgaatagggactgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaggaggccagtagctgggggagctagtgctcacggagctattctgaatagggactgta 362
Query: 421 ttctgaatatgacagtgtcacccagctggtgggtacatggctgtctccctaataaaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttctgaatatgacagtgtcacccagctggtgggtacatggctgtctccctaataaaacag 302
Query: 481 acttagggagttgtagatggcaagaggctgaaggtccaggggtaacctgcagtatttgag 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acttagcgagttgtagatggcaagaggctgaaggtccaggggtaacctgcagtatttgag 242
Query: 541 gaggaaggattaaacattttggatgcatctcatctcttaag 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggaaggattaaacattttggatgcatctcatctcttaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
