Query= MSMg01no420_n02.b1 MSMg01no420_n02.b1 CHROMAT_FILE:
MSMg01no420_n02.b1 PHD_FILE: MSMg01no420_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:46 2005
(299 letters)
>mm_chr5_124656917_124657615
Length = 699
Score = 460 bits (238), Expect = e-134
Identities = 282/300 (94%), Gaps = 8/300 (2%)
Strand = Plus / Minus
Query: 1 ttggcctattctaggcctctccagcacccagaacccagtttctcagagggtgccgtgcac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttggcctattccaggcctctccagcacccagaacccagtttctcagagggtgccgtgcac 618
Query: 61 ctttctcttttccccatggaaaaacagcatttggtatggaaccgcatagtaccagg-tgc 119
| ||| ||||||||||||| ||||||||| |||||||||||||| |||||| || |||
Sbjct: 617 cagcctcctttccccatggaagaacagcattcggtatggaaccgcagagtacc-ggatgc 559
Query: 120 ttgcctggaagagccccgagtacagggctgttaggttctgacccatgtctgcctttccat 179
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 558 ttgcctggaagagcccggagtacagtgctgttaggttctgacccatgtctgcctttcca- 500
Query: 180 tttttttttttttgtatggagatgttaggcctccaaaatgctgagccttacccaccatgc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 -----ttttttttgtatggagatgttaggcctccaaaatgctgagccttacccaccatgc 445
Query: 240 tattggcggtagtgtaggggcttgtccccaaactgaaagctgagtcccctggacactgta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattggcggtagtgtaggggcttgtccccaaactgaaagctgagtcccctggacactgta 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no420_n02.g1 MSMg01no420_n02.g1 CHROMAT_FILE:
MSMg01no420_n02.g1 PHD_FILE: MSMg01no420_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:46 2005
(379 letters)
>mm_chr5_124516131_124516909
Length = 779
Score = 621 bits (321), Expect = 0.0
Identities = 371/399 (92%), Gaps = 21/399 (5%)
Strand = Plus / Plus
Query: 1 tctaattaaaggaaaatatcatggcctatattaagaaaagctagcgtatgcctgtaatcc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 182 tctaattaaaggaaaatatcatggcctatattaagaaaagctagcatatgcctgtaatcc 241
Query: 61 cagcacttgggaggcagaagcaggaggatttctgagtttgaggccagccaggtctacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 242 cagcacttgggaggcagaagcaggaggatttctgagtttgaggccagcctggtctacaaa 301
Query: 121 gtgagttccaggacagccatcgctacacagagaaaccctgtcttgaaaaaccaaaaaaaa 180
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtgagttccaggacagccagggctacacagagaaaccctgtcttgaaaaaccaaaaaaaa 361
Query: 181 aaaaaaaaaaaaaaaaaaaaaa-aaa------------------aagagggaaaagctag 221
|||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 362 aaaaaaaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagagggaaaagctag 421
Query: 222 agagacagggagaacacattttattaaagttcccactctgaaggcaggcgctctcccttt 281
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agagacagggagaacacattgtattaaagttcccactctgaaggcaggcgctctcccttt 481
Query: 282 ggtaagatgctagg-gcatctttccttcaccctatgcttacacctatgttaaaatctttc 340
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggtaagatgct-ggagcatctttccttcaccctatgcttacacctatgttaaaatcttta 540
Query: 341 ctatcccagctcttcctaaggttccattcagaacagacc 379
|||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctatcccagctcttcctaaggttccattcagaacagacc 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
