GATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTTTATCCCCATACCCTATTCTTTAATTGGGTTATTTGGCT
TGTTGGTATCTAACTTCTGGAGTTTTTTATACATTTAGGAGATTTTCTAT
GTAGAGCTGCTGAAGATATACCCAATCTCTAGACTGCTGTTGTGTCCTAT
TAACAGTGTCATGTGCCTTACAGGGGCTTTTAAGTTTTACGAGGCCCCAT
GTCTTTATTTTTTACCTTGGTGCCTGATCTATTGAAGTTTTGTTTAGGAA
ATTGTTTCCTGTACCAATGAGATCTTTGCTATTTCCCACTTTAACTTCTA
CTAAATTTAGCATATCTGGCTTTATGTTGAGGTTTGTCACCCACTTGGAC
TTCAGTTTGGAAGAGTTTTGAGGTCACACACACACACACACACACACATA
TATATATATAAAATCATACACACACACATATATATATATACTGTACACAC
ACATATATATTATCATACACATATATACTGTACTGTACACACACATATAT
ATATACATATATATGTATATATCAAATACAGATCTATTTGCATTCTTCTA
CATGCAGACATACAATTAGACCAGCAACATCTGTTGAAGATACTTACTTT
TCTTATATTGTATGGTGTTTTGCCGCTTCTGTGAAAAGTAAAGTGTCCAT
ATGAATGTAGATTTATTTCTAGGTCTTCCGCTTGATACCATTAT

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATAGTGAATTATCACAACTAAA
CACCACCATTATTACTTTAAAGCATGTTGCCTTTCTACTTAATTTATTTT
TAATTGTATTAAGATATCTCTAATATGTTTCCTGTGTGAAGCAGGAGAGT
AAGTTTTTTTTTTTAACAGAACAGGATAAAATAATGTGTATCTATTTTCC
CTGTTAAAAGTCTAATCTTAGAAATTTTCATATGCTCCACAAAAAATAAT
AGTAAATTTCAATGGGAAAAGCTCAGATTGATTCTATAGGAAGGACATTT
CATCTTAAATTTTGAACAATAAAACAGGAGAACAATACTGAATTGTATAG
AATGTATAATTTATACTAAAGTTAATATCTAGAGTTCTATACAAATAAAT
TCATATTTACAAACATTCTTATTCTTATAACTTTGATGCAATTAATTTTG
GACAAAATAAAGGTCTTTGGGTCTTAGACACCTGCTGTTACCTCACTCCT
GACTTTAGCAAAATTAATTAAAGTTGTTCCCTAACTTTACAATTTTACAC
ACACAGACCCAAANAGGGAGAGATGGANGGNAGGGAAGGAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGNNNNNNNNNNNNNNNNNNNN

Query= MSMg01no421_f15.g1 MSMg01no421_f15.g1 CHROMAT_FILE:
MSMg01no421_f15.g1 PHD_FILE: MSMg01no421_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:29 2005
         (524 letters)



>mm_chr5_13397084_13398010
          Length = 927

 Score =  988 bits (511), Expect = 0.0
 Identities = 522/527 (99%), Gaps = 3/527 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatagtgaattatcacaactaaacaccaccattattactttaaagcatgttgcctttct 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 727 caatagtgaattatcacaactaaacgccaccattattactttaaagcatgttgcctttct 668

                                                                       
Query: 61  acttaatttatttttaattgtattaagatatctctaatatgtttcctgtgtgaagcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 acttaatttatttttaattgtattaagatatctctaatatgtttcctgtgtgaagcagga 608

                                                                       
Query: 121 gagtaag---tttttttttttaacagaacaggataaaataatgtgtatctattttccctg 177
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gagtaagttttttttttttttaacagaacaggataaaataatgtgtatctattttccctg 548

                                                                       
Query: 178 ttaaaagtctaatcttagaaattttcatatgctccacaaaaaataatagtaaatttcaat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttaaaagtctaatcttagaaattttcatatgctccacaaaaaataatagtaaatttcaat 488

                                                                       
Query: 238 gggaaaagctcagattgattctataggaaggacatttcatcttaaattttgaacaataaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gggaaaagctcagattgattctataggaaggacatttcatcttaaattttgaacaataaa 428

                                                                       
Query: 298 acaggagaacaatactgaattgtatagaatgtataatttatactaaagttaatatctaga 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acaggagaacaatactgaattgtatagaatgtataatttatactaaagttaatatctaga 368

                                                                       
Query: 358 gttctatacaaataaattcatatttacaaacattcttattcttataactttgatgcaatt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gttctatacaaataaattcatatttacaaacattcttattcttataactttgatgcaatt 308

                                                                       
Query: 418 aattttggacaaaataaaggtctttgggtcttagacacctgctgttacctcactcctgac 477
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aattttggacgaaataaaggtctttgggtcttagacacctgctgttacctcactcctgac 248

                                                          
Query: 478 tttagcaaaattaattaaagttgttccctaactttacaattttacac 524
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttagcaaaattaattaaagttgttccctaactttacaattttacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 927
Length adjustment: 10
Effective length of query: 514
Effective length of database: 917
Effective search space:   471338
Effective search space used:   471338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)