BAC Information

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BAC

Clone NameMSMg01-421G16
Chromosome5 (Build37)
Map Location 99,602,538 - 99,602,779
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm8, Fgf5, 1700007G11Rik, Bmp3, Prkg2, LOC100041680
Downstream geneRasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421G16.T7 (MSMg01no421_g16.b1)MSMg01-421G16.TJ (MSMg01no421_g16.g1)
ACCAG516049AG516050
length763799
length of high quality
(start - end)
245 (73 - 317)---
definitionCHROMAT_FILE: MSMg01no421_g16.b1 PHD_FILE: MSMg01no421_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:35 2005CHROMAT_FILE: MSMg01no421_g16.g1 PHD_FILE: MSMg01no421_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATATTTGCGGCGCTAAACGACTCACAAATGCAGAAATCCGCGGAAT
TCTTTTCAGTTTCAGAACATGAAACTGGAATGTTTCCTTGTCTTGGTGCT
AACTGCTCCGATTCTCCTTTCCGCCTGGTGACACTGATATTGCTGGGTAA
GAAAAAGTATGGTTTGTCCAGTTGAAAAATGTCTCAGAATATTTCTGTAC
TACAGAACATAAGATAACTTCATGAGCCCTTAAGCATCCTTTGGGGTCCT
GGAGAGCCAGGCTTTTCCCCTGAAACACTTCAGCCTTCCATTTATAGTGA
ATGACTCCTGCACATTNGTGNTAAGGCAGATGAGTTACTTTGTGTCCCTG
TGATCAGATACCTAGGCCAAACAACTGAACAGCTGGAATTACTTATTTAG
CTTGCAGTTTCAGAGGGGCATAGTCCATCAGGGCTTGGACTATGTGGTGG
TGTGGAAGTTCTCCACATGGTGGACAGCATGCATAGAGAAAGATAGTGAG
GGGCCAAGGTCAGATAGTCCTAAAGACCTAGCTCTAGCCAGCAATTTCCT
CCAGCTGGATCTCACGTCCTAAATCCGCCTTTGGTGCTTATAGGACTGCA
ACAATTATATCTCCCAATATGATGGGGTACAAAAGCAAGGAAGCTCTTGA
ATTTTTATGTAGCACCTTGCCCACATGTTTTGTAGTGGTTCCTCTGACAG
TTCTTTGCTACGGTCCTTATTTACTTAAGCTTTGACCATTTACTTTTCCA
TATTTTCAACCTT
CCATGCTTNNNNAANCNNGNNGNNGNNCGGNTTTTCAAATCTCTGGTGAA
CTATANAANGATCCCAACAATTCTGTGAACATCTGANAAAAAGGAAAAAA
CGGCACGAACGCCTGATATGCACATGCTGNTGGTCAGTTCAAATCCCAAG
GNCANGGTGACTCTACTGTGNTTCANGNNAGCGGGAAGGANAAAAAGGNC
ATGNAGTTTTGANNNNNTTTTAAAACANTAAAAACCTTTTNNAAAAAANN
TCTTTTTTTTCTCCCCCAAAAATTTTTAANACAAATTTTACCCACCCCCC
CCTTTTTTTCCAAACTTTTTTTTTTTTAANATCCATTTCTCCTCTGTGGG
GTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGG
GGGGGGGGGGGGTTNNNTNTCCTTATTCTTCTTCTTGTAGGTTGGGGGGG
NNNNNTCCGCTTCTAGGGGGGGGGGGGGGGGAGGGGGAGGGGGGGGGGGG
GAAACTAAAATANNNNTCTCTCTACCTGTCCCTTCTTTTTTNTNNTTNTN
NTNTTTTCCTCTTCTTTCTTGGCCGCCGCTTTTTTNNCNNCNCCCNNCCC
TTTCTCTTCTCTTTTTTCCTTCTCCTTNNTCCTCNNCCCCTTTCCTTTTC
CTTCCTTANCCCCCTCTTTTTTTTCATTTCCCTTTTCTCTTTTTTCTTTC
TCTCTTTTCTTACTCCCTTTCCTTCTCATTCTCCCCNCTTTCACCCCTTC
TACCTCATTTCTTTTTTTTTTTTTTTCTTCTTCTTCTTCGTTTTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_g16.b1 MSMg01no421_g16.b1 CHROMAT_FILE:
MSMg01no421_g16.b1 PHD_FILE: MSMg01no421_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:35 2005
         (245 letters)



>mm_chr5_99602338_99602982
          Length = 645

 Score =  406 bits (210), Expect = e-118
 Identities = 234/242 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactggaatgtttccttgtcttggtgctaactgctccgattctcctttccgcctggtgac 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 aactggaatgtttccttgtcttggtgctaactgctccaattctcctttccgcctggtgac 383

                                                                       
Query: 61  actgatattgctgggtaagaaaaagtatggtttgtccagttgaaaaatgtctcagaatat 120
           |||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 382 actgatattgctgtttaagaaacagtatggtttgtccagttgaaagatgtctcagaatat 323

                                                                       
Query: 121 ttctgtactacagaacataagataacttcatgagcccttaagcatcctttggggtcctgg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 322 ttctgtactacagaacataagataacttcgtgagcccttaagcatcctttggggtcctgg 263

                                                                       
Query: 181 agagccaggcttttcccctgaaacacttcagccttccatttatagtgaatgactcctgca 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 262 agagccaggcttttcccctgaaacatttcagccttccatttatagtgaatgactccttca 203

             
Query: 241 ca 242
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)