Query= MSMg01no421_k22.b1 MSMg01no421_k22.b1 CHROMAT_FILE:
MSMg01no421_k22.b1 PHD_FILE: MSMg01no421_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:57 2005
(523 letters)
>mm_chr5_132486507_132487429
Length = 923
Score = 884 bits (457), Expect = 0.0
Identities = 487/497 (97%)
Strand = Plus / Minus
Query: 27 tcaccaatcctttaccacactcaatgtatgtgtgtgcacacagtgtgcctgtgtcataac 86
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 923 tcaccaatcctttaccacactcactgtatgtgtgtgcacacagtgtgcctgtgtcttaac 864
Query: 87 acttatttgtatgaaggtcagaggataactcatgaaattggagtgagtcagttgtctcct 146
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 863 acttatttgtgtgaaggtcagaggataactcatgaaattggagtgagtcagttctctcct 804
Query: 147 ttcaccacattgagccctgggtttcagactcaggttgtcaggccgggcagcaagtgctat 206
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 803 ttccccacattgagccctgggtttcagactcaggttgtcaggccgggcaacaagtgctat 744
Query: 207 aaccaactgagccatctcacactccctgtgtttgcccccaggtcagtgctaatgatccaa 266
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aactaactgagccatctcacactccctgtgtttgcccccaggtcagtgctaatgatccaa 684
Query: 267 acccaagtcaccatgctaacaagcactcaaccctctgaactccacacttggattgcggcc 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 683 acccaagtcaccatgctaacaagcactcaaccctctgaactccacacttggattgcagcc 624
Query: 327 tatgttattattgtcccacaaaaggtcctctcctacttagcatggtcccagacatgggcc 386
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatgttattattgtcccataaaaggtcctctcctacttagcatggtcccagacatgggcc 564
Query: 387 cgatcaaattttaaaatagagagcaaagctttagggtggagatgggggaacaattagact 446
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 cgatcaaattttaaaatagagagcaaagctttagggtggagatgggggaaaaattagact 504
Query: 447 tgagaacaaagcatagatgtcttagattctcagagtgtcaagagtgataaaggaaaggca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgagaacaaagcatagatgtcttagattctcagagtgtcaagagtgataaaggaaaggca 444
Query: 507 tttttaagtgtcttgcc 523
|||||||||||||||||
Sbjct: 443 tttttaagtgtcttgcc 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_k22.g1 MSMg01no421_k22.g1 CHROMAT_FILE:
MSMg01no421_k22.g1 PHD_FILE: MSMg01no421_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:57 2005
(449 letters)
>mm_chr5_132325256_132326101
Length = 846
Score = 775 bits (401), Expect = 0.0
Identities = 436/449 (97%), Gaps = 3/449 (0%)
Strand = Plus / Plus
Query: 1 tctggaaagaaacatttcaacactgggtcctacgatgatatgttgggctttgatgccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggaaagaaacatttcaacactgggtcctacgatgatatgttgggctttgatgccttt 260
Query: 61 tctggtgcagaatcttaatgtgcacttgttgctctgtgtctggttccccagttccagagc 120
||||||||||||||||||||||||||||||||||||| ||| |||||| | | ||||
Sbjct: 261 tctggtgcagaatcttaatgtgcacttgttgctctgtctctaattcccctgat---gagc 317
Query: 121 gtggactctggagaaagaatgaagaaagaagaaaacataggggaagaggagaaaggctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtggactctggagaaagaatgaagaaagaagaaaacataggggaagaggagaaaggctgc 377
Query: 181 aggcagggctgcatacacaggaaaggcaggcatacaagacagggcagactgggtctggcc 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 378 aggcagggctgcatacacaggaaaggcaggcatacaagacagggaagactgggtctggcc 437
Query: 241 cccatgctgatctggttcctgctttactgaagtgtttcactaggccccattgtcatcagg 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cccatgctgatctggttcctgttttactgaagtgtttcactaggccccattgtcatcagg 497
Query: 301 ttaaaaactcactgtgatgttaaaaggagccatttcacagacacagaagcaattaatgac 360
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 498 ttaaaaactcactgtgatgttaaaaggagtcatttcacagacacagaagcaactaatgac 557
Query: 361 agagcccctgaagcgcagactccaggtctgcatatatcagcctctctgcatatatcaggt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agagcccctgcagcgcagactccaggtctgcatatatcagcctctctgcatatatcaggt 617
Query: 421 cctctccagattcggaagaattcttgtag 449
|||||||||||||||||||||||||||||
Sbjct: 618 cctctccagattcggaagaattcttgtag 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 846
Length adjustment: 10
Effective length of query: 439
Effective length of database: 836
Effective search space: 367004
Effective search space used: 367004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
