ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGG
AATTCTAGAATGGTTCTCAATATGGCTGCCATATTATCCCTGGTGGACAC
TTTCTCTTTACTTCATTTCCTTTTCCAAAAAAAAAATCTATTACTTTATT
TTTTGTTCAGTGTTTTGTTTCTCAGATGTCAATTGTGTCATGCTACAAGT
TTTCCCGCAGCTTTCCTACAGGAAGACTGCAGGGTGCAAATTCTAGCATT
AGAGAGAACTAAAGCTACAAACCACAGTACAGGGAAAAAAGTAACACCCC
ATGAGCTGGTACATGAACACAAATCTTTCTCAATATTAACTGGTAAGTAG
GTAGGCTAAAATCTTGGTTACAATCACTCAATCTTTAGACCATCTGCAGC
CAGAACAATTTATAGAAACTCTGTAGAAGCTAAGTATTTCTCTCTTTTCT
GTTATTTTCTGTAGTCGATGTTTCACTGAATGTCAAATTATGACAGATAT
GTCAGATAAAAAAAGATACGAAAGATGCTAGTGGTTTACAAATATGTCAA
TAAGATGCGATAACATTGGTATTTTGAGCACTGAATTTAATTATTTAAGC
ACTGAGTTCCCCAAATATACTGATTGTTGCTGTGGTTCATAACTTCTTGG
AAGAAGTTATCTATTTAAATAATCAATGTAGCCATAAATAATAAAAATAC
GTACTCAAAAATAGGAAAGGTATTTATTTTATATTACTGCATTCTATTTT
ATGAAAAGGCG

NCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGA
AACAATCCTCCACTGTTGGTGGGATTGTAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCATATTTTTTGGACATAGTACTACCAGAGGA
TCCAGCAATACCTCTCTTGGGCATATATCCAGAAGATGCCCTAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGCCATCATCCTG
AGTGAAGTAACACATTTCCCAAGGAACTTACACAATATGTATTTCACTGA
TATGTGGATAATGTTCTTTACCTATGGAACCCTTAATATTAATTTTTTTT
CCTTAACATTTGATACTTTGAAAAATTATAATCGATTTGGGTATCCTTAT
TCCTCTCCTATAT

Query= MSMg01no421_m15.b1 MSMg01no421_m15.b1 CHROMAT_FILE:
MSMg01no421_m15.b1 PHD_FILE: MSMg01no421_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:05 2005
         (571 letters)



>mm_chr5_70830979_70831948
          Length = 970

 Score = 1052 bits (544), Expect = 0.0
 Identities = 565/572 (98%), Gaps = 3/572 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgccatattatccctggtggacactttctctttacttcatttccttttccaaaaaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 770 gctgccatattatccctggtggacactttctctttacttcatttcctttt-caaaaaaaa 712

                                                                       
Query: 61  aatctattactttattttttgttcagtgttttgtttctcagatgtcaattgtgtcatgct 120
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 711 attctattactttattttttgttcagtgttttgtttctcagatgtcaattttgtcatgct 652

                                                                       
Query: 121 acaagttttcccgcagctttcctacaggaagactgcagggtgcaaattctagcattagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 acaagttttcccgcagctttcctacaggaagactgcagggtgcaaattctagcattagag 592

                                                                       
Query: 181 agaactaaagctacaaaccacagtacagggaaaaaagtaacaccccatgagctggtacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agaactaaagctacaaaccacagtacagggaaaaaagtaacaccccatgagctggtacat 532

                                                                       
Query: 241 gaacacaaatctttctcaatattaactggtaagt-aggtaggctaaaatcttggttacaa 299
           |||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct: 531 gaacacaaatctgtctcaatattaactggtaagtga-gtaggctaaaatcttggttataa 473

                                                                       
Query: 300 tcactcaatctttagaccatctgcagccagaacaatttatagaaactctgtagaagctaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tcactcaatctttagaccatctgcagccagaacaatttatagaaactctgtagaagctaa 413

                                                                       
Query: 360 gtatttctctcttttctgttattttctgtagtcgatgtttcactgaatgtcaaattatga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtatttctctcttttctgttattttctgtagtcgatgtttcactgaatgtcaaattatga 353

                                                                       
Query: 420 cagatatgtcagataaaaaaagatacgaaagatgctagtggtttacaaatatgtcaataa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cagatatgtcagataaaaaaagatacgaaagatgctagtggtttacaaatatgtcaataa 293

                                                                       
Query: 480 gatgcgataacattggtattttgagcactgaatttaattatttaagcactgagttcccca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gatgcgataacattggtattttgagcactgaatttaattatttaagcactgagttcccca 233

                                           
Query: 540 aatatactgattgttgctgtggttcataactt 571
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aatatactgattgttgctgtggttcataactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space:   538560
Effective search space used:   538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)