Query= MSMg01no422_h10.b1 MSMg01no422_h10.b1 CHROMAT_FILE:
MSMg01no422_h10.b1 PHD_FILE: MSMg01no422_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:55 2005
(617 letters)
>mm_chr5_83772194_83773210
Length = 1017
Score = 990 bits (512), Expect = 0.0
Identities = 569/614 (92%), Gaps = 41/614 (6%)
Strand = Plus / Plus
Query: 5 gaattctctgttat-tcaatatatattactgattgtatattcatttgtaagaatatgatt 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gaattctctgttaaatcaatatatattactgattgtatattcatttgtaagaatatgatt 303
Query: 64 cttctatcataaaatatttatatattatagtgttccctcaacagataccaaatatgcctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cttctatcataaaatatttatatattatagtgttccctcaacagataccaaatatgcctt 363
Query: 124 tctgtcaaaagatgaacactaatatatatatatatgtatatatatatatatatatatata 183
||||||||||||||| ||||||||||||||||||||
Sbjct: 364 tctgtcaaaagatgagcactaatatatatatatatg------------------------ 399
Query: 184 tatatatatatatatgccaatttctctaaagcatataccctagaaatttaagaaatagat 243
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ----------------ccaatttctctaaagcatataccctagaaatttaagaaatagat 443
Query: 244 acatctgaataaatatgattatatatgataccaaaatagtactagtaggttttgtaaaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatctgaataaatatgattatatatgataccaaaatagtactagtaggttttgtaaaaa 503
Query: 304 atttacttgaagtacagcttaaaacagaaaacaaagacaaaaaaatgtaaaaaataatta 363
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttacctgaagtacagcttaaaacagaaaacaaagacaaaaaaatgtaaaaaataatta 563
Query: 364 aaaataatgttagagttttgcagtttacccatgcttagagtagatttagcatcacatctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaataatgttagagttttgcagtttacccatgcttagagtagatttagcatcacatctg 623
Query: 424 tactgaattaagtctgaattctgattaaatgaagttcagattttcattcagtgatgttta 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 tactgaattaagtctgaattctgattaaatgaagttcagattttcattcaatgatgttta 683
Query: 484 caacaagcaggtaataaatctgttttcagtgatgcatacaccagtatagacaaataaata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caacaagcaggtaataaatctgttttcagtgatgcatacaccagtatagacaaataaata 743
Query: 544 actcatcaagaaagcaatttatcaaacgctttgctagaagaaattactaattacattata 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actcatcaagaaagcaatttatcaaacgctttgctagaagaaattactaattacattata 803
Query: 604 ttatgggtttcaaa 617
||||||||||||||
Sbjct: 804 ttatgggtttcaaa 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_h10.g1 MSMg01no422_h10.g1 CHROMAT_FILE:
MSMg01no422_h10.g1 PHD_FILE: MSMg01no422_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:55 2005
(547 letters)
>mm_chr5_83904284_83905230
Length = 947
Score = 980 bits (507), Expect = 0.0
Identities = 537/547 (98%)
Strand = Plus / Minus
Query: 1 ctcatttattccttgcattgatttgcttatttcatttaactccccgtttatactctctca 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctcattcattccttgcattgatttgcttatttcatttaactccccgtttatactctctca 688
Query: 61 aatttcatccagaatcttctgggtgaattattggttgctcctttcctttcttttctgaaa 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aatttcatccacaatcttctgggtgaattattggttgctcctttcctttcttttctgaaa 628
Query: 121 acctttataaatatctattgaattccttgtttgtgatttcacttatttcacttttcttgg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 627 acctttataaatatctattgaattccttgtttgtgatttcacttatttcactttccttgg 568
Query: 181 actccattagtctggagtagtagtttttagagaattttggttgccagttttttgtatctt 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 567 actccattagtctggagtagtagtttttacagaattttggttgccagttttttgtatctt 508
Query: 241 atgtatcttagttggagcatacacacctgtaattaggcttcaagttggattccttgttaa 300
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atgaatctcagttggagcatacacacctgtaattaggcttcaagttggattccttgttaa 448
Query: 301 ttatctatgttattgtagtggaaatgtgtgtgaggttaaccaaaaactatgttgcagcca 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 ttatctatgttattgtagtggaaatgtgtgcgaggttaaccaaaaactatgttgcagcca 388
Query: 361 aattgtagattcatttccctcaacaaactagtagtgtagttcatttgctacacctccagt 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 387 aattgtagattcatttccctcaacaaactagtagtgtagttcagttgctacacctccagt 328
Query: 421 tcacatgtccgggcaatgtatctgcacacaacactactatttgtgaagaaattgaaccgc 480
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 327 tcacatgtccaggcaatgtatctgcacaccacactactatttgtgaagaaattgaaccgc 268
Query: 481 tgaggcaaatacaattgattggagatcctactattaattcataaaaataaccaaagtaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaggcaaatacaattgattggagatcctactattaattcataaaaataaccaaagtaaa 208
Query: 541 tcaaact 547
|||||||
Sbjct: 207 tcaaact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
