BAC Information

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BAC

Clone NameMSMg01-422L18
Chromosome5 (Build37)
Map Location 15,185,205 - 15,185,643
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422L18.T7 (MSMg01no422_l18.b1)MSMg01-422L18.TJ (MSMg01no422_l18.g1)
ACCAG517054AG517055
length751741
length of high quality
(start - end)		489 (42 - 530)439 (71 - 509)
definitionCHROMAT_FILE: MSMg01no422_l18.b1 PHD_FILE: MSMg01no422_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:15 2005CHROMAT_FILE: MSMg01no422_l18.g1 PHD_FILE: MSMg01no422_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACATGGAATTACATTTTTCAAAATTTTCATATTATTAAAAAAGAGAGAA
TCATTGTCTACAAATTCATTTATGTCCAACTATGCAAATACAACTTCAAG
CACTCTGGAAATTCTATGATGATGCTAACAATTTCAGGAATTTCCAACAG
GACGCATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTAGCTGA
ATGTTCAAATCAGAAAGCAAAGAGAAGAATTTACATTTTCAGTAACTTTA
GGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCAGGTAC
AGCAGGATATTAGGCCATGCAATTGGATAGGGAGATACAGAAGCTATATA
GTACTTCAAGTGTTGCTATCATATATGTCTAATTGATATTTTACAGATTA
ATGCCAAGTAAAATCAAAATATAGTCTCCTACCCATTACATCTTAAAACA
CAATGATCTATCAACAGTTGCCATTTCACAGCAAAAGGAAAGCAGTAGGT
ATAAATTGAACACAGAACTGCTTCTCTTGTNAGAAATGAACCCGGATATA
TAGATACCTGTATACCTATACATTCTCCTTTGAAATTCCAGGGGAATAAT
TTGCTTTACTACCCCAAAAAAAAAAACCGGGCTGGGGGCAGGGGAAAAAA
GCCCTTTTTCCCCCTTTTTAAAAAAACATTTGGCCCGGCGGTGGGGGGAC
A

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCAGGAAAGAACAAGAGCCCAAAAGGCAG
AGGAGAAGTGTTCATGGGTGCACTAGCCAGTTACCTCTGGAAGAGCAGCT
GCATGGATTCAGGATGCACTTCATGCACACTGGGTGCCATGCTGGATGGC
TGTGGAAAGTCATCTCTTACTAAGTCCTAATCAAAATGCTTCTAGAGAAC
TCCACACTGAGTCAGGGCTTTCTGTTCCCAAGCAAACCACAGCACTGATC
TCCATCTGTTTTTCTCTGACTCTTAAAACATCCTTCCAAATTGAAAAACA
AAGCACAAAATCATCTTAATTGCCTTGCCAAAGGGTTGGAAAGGAACACC
ACTTTTTGTTCAAAAGACAACTTCAGAAACCAAAAGAGAAGCCTCAAATG
GGCCAAAAGCCACAAATTGAAAAACAAAAGAAAAACAAGGCTGGCTGTCT
ACTGCCAGCAGGAGTTCACAAGGGAGAGAAGCTCTGACTCAAAATAGTCA
CTTTTTCATTTTTGTCAATGATGGCAAAAAGCCATGGGTGCTGGCTAAAA
GAAAGAAAAGGATGTTCCAGAAAAAAAAAGGTCCTCTTTGTTGCAGAAAT
TGATTTCTCCTTATAACCAGGGCGGAAAACTGTCGGAAAAAATTTTGGGA
GGTCCCCTCTTTGGGGGGAACACGAAAATCTTTTCCCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_l18.g1 MSMg01no422_l18.g1 CHROMAT_FILE:
MSMg01no422_l18.g1 PHD_FILE: MSMg01no422_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:15 2005
         (439 letters)



>mm_chr5_15185005_15185843
          Length = 839

 Score =  803 bits (415), Expect = 0.0
 Identities = 433/439 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 580

                                                                       
Query: 61  ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 520

                                                                       
Query: 121 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 460

                                                                       
Query: 181 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 400

                                                                       
Query: 241 tttctctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 340

                                                                       
Query: 301 tgccttgccaaagggttggaaaggaacaccactttttgttcaaaagacaacttcagaaac 360
           |||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| 
Sbjct: 339 tgccttgccaaaggattggaaaggagcaccactttttgttcagaagacaacttcagaaaa 280

                                                                       
Query: 361 caaaagagaagcctcaaatgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 caaaagagaagcctcaaacgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 220

                              
Query: 421 ctggctgtctactgccagc 439
           |||||||||||||||||||
Sbjct: 219 ctggctgtctactgccagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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