BAC Information

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BAC

Clone NameMSMg01-422O16
Chromosome5 (Build37)
Map Location 5,454,683 - 5,454,991
singlet/doubletsinglet
Overlap gene1700015F17Rik
Upstream geneFzd1, LOC667678, Pftk1
Downstream geneCldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422O16.T7 (MSMg01no422_o16.b1)MSMg01-422O16.TJ (MSMg01no422_o16.g1)
ACCAG517194AG517195
length716720
length of high quality
(start - end)
612 (36 - 647)309 (323 - 631)
definitionCHROMAT_FILE: MSMg01no422_o16.b1 PHD_FILE: MSMg01no422_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:28 2005CHROMAT_FILE: MSMg01no422_o16.g1 PHD_FILE: MSMg01no422_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCACG
CAGTTTACTCTTTCTCACAGTCTGTTTTACGGGAACCTTCATTACCATAA
CTCACAGTTCTGGTTTCGGAATGAGGGATCTTTCTTGCGCTGGTGATGGT
TAACTCTCGTCCCGAGTTTTCTTGTATTTTTTCTTCCCGGGTTTCGGCAC
CAACTCTTAAACGCGTTCTCACGACCGGCCAGGAAGAACACAACAAACCA
GAATCTTTTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAGGAGCG
CAAGCCCCAAGCCCCTAAAACGAAAGCCCCCCTGCTTACATCTTTAGGAG
CCAGAGCGCCAGAGCGCCAGAGCGCAGAGCAAAAGCTCTATTGTTTACAT
CTTTAGGAGCCAGAAGCAAGAGCCAGAGCCAGAGAGCAAAAGCGCAAGAG
CGCAAGCAAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTAAGGAGAATT
ATCCTCCGCCTAGGACGTATCACTCCCTGATTGGCTGCAGCCCATGGCCG
AGTTGACGTCACGGGAAAGGCAGAGTACATGTAGTGGAAAGCTACCCTTG
GCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCGC
CATCTTGTGACGGCGAATGTGTGGGCGGCTCCCAACAGACAAATACATGG
AATCTGTTATTAGCTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATTTAGAAGGCCACTGGTAATTCTCTTTCAA
GAAACGTGGACTGGTGGCACATAGAATTATATTTTCTATTTCCTCTTTGA
GTTTTTTATAGAATAGTTAGTTATACAGTTGTGTCTCTTGGATAGTTACA
AGTTTTAGACTTAAGAAGTGAACATTCGGGGATATAATTAAAGACACAAA
GTCGTAAAGGACAACTACATTAAGTCACATGAACGAGAAAGCTTACAGAA
CTGGGGGTGTCCAGATTTTTTTAAGAAACGACATTAAGTATCGGGAATCA
AAAAAATTTGAGGCACGGTCTCTCTATGTGGATCAGACTGGACCCTGATT
CAGAGATGCCCCTGCCTCTGTCCCTGAATGCTAAGGTTAAAGATGAACAT
TACCACTTCTGGCAATCAAATTTTGTATCTTAAATAAGAAGAAAAAGAGT
CAGAAAAACAGGATCCAAAGCACTGAGTGAATTCCAAAAAATAAGCAAGA
TGCAAATATCAGTAACCTTAAAGTTACTGATGGCACACAGGANAAATAAC
TAAACATCACAACATAACATGTAAATTAGCAGAATAGCAAAACAAGAACA
ATATATGGTCATCACAAGTCAAAAGTTCTAGTCTTCTTGATGGGGAGCTA
AGGGTAACGTGTCGTGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_o16.g1 MSMg01no422_o16.g1 CHROMAT_FILE:
MSMg01no422_o16.g1 PHD_FILE: MSMg01no422_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:28 2005
         (309 letters)



>mm_chr5_5454483_5455191
          Length = 709

 Score =  553 bits (286), Expect = e-162
 Identities = 303/309 (98%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   agaaacgacattaagtatcgggaatcaaaaaaa-tttgaggcacggtctctctatgtgga 60
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agaaatgacattaagtatcgggaatcaaaaaaaatttgaggcacggtctctctatgtgga 260

                                                                       
Query: 61  tcagactggaccctgattcagagatgcccctgcctctgtccctgaatgctaaggttaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagactggaccctgattcagagatgcccctgcctctgtccctgaatgctaaggttaaag 320

                                                                       
Query: 121 atgaacattaccacttctggcaatcaaattttgtatcttaaataagaagaaaaagagtca 180
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 atgaagattaccacttctggcaatcaaattttgtatcttaaataagaagagaaagagtca 380

                                                                       
Query: 181 gaaaaacaggatccaaagcactgagtgaattccaaaaaataagcaagatgcaaatatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaaacaggatccaaagcactgagtgaattccaaaaaataagcaagatgcaaatatcag 440

                                                                       
Query: 241 taaccttaaagttactgatggcacacagganaaataactaaacatcacaacataacatgt 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 taaccttaaagttactgatggcacacaggaaaaataactaaacatcacaacataacatgt 500

                    
Query: 301 aaattagca 309
           ||| |||||
Sbjct: 501 aaaatagca 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)