BAC Information

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BAC

Clone NameMSMg01-422O23
Chromosome5 (Build37)
Map Location 15,112,673 - 15,113,156
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422O23.T7 (MSMg01no422_o23.b1)MSMg01-422O23.TJ (MSMg01no422_o23.g1)
ACCAG517208AG517209
length725739
length of high quality
(start - end)		600 (42 - 641)482 (71 - 552)
definitionCHROMAT_FILE: MSMg01no422_o23.b1 PHD_FILE: MSMg01no422_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:29 2005CHROMAT_FILE: MSMg01no422_o23.g1 PHD_FILE: MSMg01no422_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTC
ACATGGAATTACCTTTTTCAAATTTTTCATTGTATTAAATGAGAGAGAAT
CATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACTCCAAGT
ACTCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCCAACAGG
ACGCATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTAGCTGAA
TTTTCAAATCAGAAAGCAAAGATAAGAATTTACATTTTCAGTAACTTTAG
GATCTGTGAGTGTTGTTAATTTATATACCGTTATGAGGAGTCCAGGTACA
GCAGGATATTAGGCCATGCACTTGTATAGGGAGATACAGAAGCTACATAG
TACTTCAAGTGTTGCTATCATATATGTCTAAGTGACATTTTACAGATTAA
TGCCAAGTAAAATCAAAATATAGTCCCCTACCCATTACATCTTAAAACAC
AATAATCTATCAACAGTTGCCATTTCACAGCAGAAAGAAAGCAGTAGGTA
TAAATTGAACACAGAACTGCTTCTCTTGTAAGAAATGAACACAGATATAT
AGATACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGGNTAATTT
GCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGNAAAAAAGCTC
ATTTTCCATGTTTAAAAGTACATTG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCTTCTCAGGTACAACTGGGTCTTTGTCA
AGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAGCAT
TGAAAGTCTGAGTAGTCGGTGGGCATCCCTGCACATGTGCCTGTGGGTAG
CTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCATG
GTCGCTGTTCTAGTGATAAACCAGATTCTGGAGAAAGCTCTATTGTTGTT
AAGACTTGAGAGGAGCTTGGTGTCTGATTATGGGATGGATCCCCGGGTGG
GGTAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCCGTAACT
CCTTCCATGGGTATTTTGTTCCCTATTCTGACACTACTGCATATGCCAGC
AAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTATGGCTATGCCA
GTACCTGGCAAACAGAAGTGGATGCTCACAGTCATTTATAGGATGGAGCA
CAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGA
TCTGCCACCCTATTAGGTGGAACAACAATATGAACTAACCAGTACCCCCC
GAGCTTGTTTCTCTAAGTGCCTATGGACCAAAGGAGGGCCTAACCCGCCC
TTCTTTGTAAAAAAAGCCCCTAAGTCTTGGTAATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_o23.g1 MSMg01no422_o23.g1 CHROMAT_FILE:
MSMg01no422_o23.g1 PHD_FILE: MSMg01no422_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:29 2005
         (482 letters)



>mm_chr5_15112473_15113354
          Length = 882

 Score =  833 bits (431), Expect = 0.0
 Identities = 471/485 (97%), Gaps = 4/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 260

                                                                       
Query: 61  aaatgaaacggaagcagcattgaaagtctgagtagtcggtgggcatccctgcacatgtgc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 320

                                                                       
Query: 121 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 380

                                                                       
Query: 181 gtcgctgttctagtgataaaccagattctggagaaagctctattgttgttaagacttgag 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 440

                                                                       
Query: 241 aggagcttggtgtctgattatgggatggatccccgggtggggtagtctctggatggtcca 300
           |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 441 aggagcttggtggctgattatgggatggatcatcgggtggggtagtctctggatggtcca 500

                                                                       
Query: 301 tcctttcgtcttagctttgtctccgtaactccttccatgggtattttgttccctattctg 360
           ||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 501 tcctttcttcttagctttgtctccgtaactccttccatggcttttttgttccctattctg 560

                                                                       
Query: 361 acactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtcttgt-a 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 acactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtcttgtga 620

                                                                       
Query: 420 tggctatgccagtacctggcaaaca--gaagtggatgctcacagtcatttataggatgga 477
            |||||||||||| |||||||||||  ||||||||||||||||||||| |||||||||||
Sbjct: 621 -ggctatgccagtgcctggcaaacacagaagtggatgctcacagtcatctataggatgga 679

                
Query: 478 gcaca 482
           |||||
Sbjct: 680 gcaca 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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