BAC Information

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BAC

Clone NameMSMg01-423E05
Chromosome5 (Build37)
Map Location 4,856,632 - 4,857,154
singlet/doubletsinglet
Overlap genePftk1
Upstream gene4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423E05.T7 (MSMg01no423_e05.b1)MSMg01-423E05.TJ (MSMg01no423_e05.g1)
ACCAG517460AG517461
length732732
length of high quality
(start - end)
230 (311 - 540)523 (65 - 587)
definitionCHROMAT_FILE: MSMg01no423_e05.b1 PHD_FILE: MSMg01no423_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:54 2005CHROMAT_FILE: MSMg01no423_e05.g1 PHD_FILE: MSMg01no423_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCGCTAAACGACTCACTTTTCGAAGAGGACCGCGGAATTCATGCTTT
TCAATCCTTCTCACAGTCTGTTTTACGGGAACCTTTATTACCGTGACCCG
CAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCGGTCCCGAAGCTT
CTTGTATTTTTTCGTCCCGGATTTTTTCTCGTCCCGGATTTCAGCACCAA
CTCTTATACGCGTTCTCACGACCGGCCAGGAAAGAATACAACAAACCAGA
ATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAGGAGCGCA
TTTTTTCTTTCCCCAAAAACGAAAGCGCCCCTCTTACATCTTTAGGAGCC
AGAGCGCCAGCGCGCCAGCGCAAGAAGCGCAAGTAAGAGAGCTATTGTTT
ACATCTTTAAGAGCAAGCGCGCCAGAGCGCAAGCAAGAGAGGAGAATGGC
GGAAACCCCGTCCCCTTTAAGGAGGAGTTATCCTTCGCTTAGGACGCATC
ACTCCCTGATTGGCTGCAGCCCATGGCCGAGCTGACGTCATGTGAAAGGC
AGAGTACAAGTAGTGGTATAATACCCTTGGCACATGCGCGTATTATTTGG
TTACCACTTANAACACCGGATGTCAGCGCCATCTTGTGTTTTTTAACGTG
GGGGCGGGCTCCTATCAATTGAACATGCTTCCTTCCTATGGGTTCAAATA
TAAACCTTCCTTCGGTGTAATAAGAGGACTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
ACTAAAGAAATTCAAAGACATACCATCACAGCATCATAATATGCACAATT
GTAAGTGGAGTCCTACCGAACTCTGGAGTCAGGGGAACAGGGGAATCAGA
ACCAACTCCCACCCCTGATCCCATTCTTGTTTTGTTTTGCTTTGTTATTT
TTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAC
TCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTC
CCAAGTGTTGTTATTAAAGGCGTGCGCCACCACACCCAGCTCCCTGATCC
CATTCTATAGGCCAACTGTAATCCCTCAGCTTTCTAACAGGTAGAGTAAT
GTTTTGCAAAGACTGAGAGCCTGATTATGGTCATAGCTGCCTGCACTTGA
ACACCAAGAAGTTTGCATTAGACTATTGTGCATCAAGTTCATGATTCTGT
AATAAAGATGCTCTTGGCTGACTTACAAATGTTAGCAAATACACTCTTTG
AAAATAGGACTTTCGAGTCATAGGTTTCAAATTATAGACAGCCTGCCTGT
TGGGACATGGACACAGAGCAGGGAGACACAACAGTGCGGCAGAAATGTGA
AGGGCCTCTGGCTTTAAAGACTAAGTGTGGTCTATTTCATGCAATATACA
ATCTTCAGAAAACTGTTGATTTTAATGGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_e05.g1 MSMg01no423_e05.g1 CHROMAT_FILE:
MSMg01no423_e05.g1 PHD_FILE: MSMg01no423_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:54 2005
         (523 letters)



>mm_chr5_4856432_4857354
          Length = 923

 Score =  934 bits (483), Expect = 0.0
 Identities = 513/523 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacataccatcacagcatcataatatgcacaattgtaagtggagtcctaccgaactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagacataccatcacagcatcataatatgcacaattgtaagtggagtcctaccgaactct 260

                                                                       
Query: 61  ggagtcaggggaacaggggaatcagaaccaactcccacccctgatcccattcttgttttg 120
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 261 ggagtcaggggaacaggggaatcagaaccaactcctgcccctgatcccattcttgttttg 320

                                                                       
Query: 121 ttttgctttgttattttttttccagacagggtttctctgtgtagccctggctgtcctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgctttgttattttttttccagacagggtttctctgtgtagccctggctgtcctgga 380

                                                                       
Query: 181 actcactctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcactctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccaa 440

                                                                       
Query: 241 gtgttgttattaaaggcgtgcgccaccacacccagctccctgatcccattctataggcca 300
           ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgctgggattaaaggcgtgcgccaccacacccagctccctgatcccattctataggcca 500

                                                                       
Query: 301 actgtaatccctcagctttctaacaggtagagtaatgttttgcaaagactgagagcctga 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgtaacccctcagctttctaacaggtagagtaatgttttgcaaagactgagagcctga 560

                                                                       
Query: 361 ttatggtcatagctgcctgcacttgaacaccaagaagtttgcattagactattgtgcatc 420
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 561 ttatggtcatagttgcctgcacttgaacaccaagaagtttgtattagactattgtgcgtc 620

                                                                       
Query: 421 aagttcatgattctgtaataaagatgctcttggctgacttacaaatgttagcaaatacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 aagttcatgattctgtaataaagatgctcttggctgacttacaaatgttagcaaacacac 680

                                                      
Query: 481 tctttgaaaataggactttcgagtcataggtttcaaattatag 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctttgaaaataggactttcgagtcataggtttcaaattatag 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)