This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-423K01
Chromosome
5 (Build37)
Map Location
55,003,165 - 55,187,861
singlet/doublet
doublet
Overlap gene
EG666377
,
LOC666380
Upstream gene
Rbpj
,
Cckar
,
Tbc1d19
,
Stim2
Downstream gene
EG666405
Link
Open Mouse BAC browser
Click to get alignment info.
name
Rbpj
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:19664
MGI:96522
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs
name
Cckar
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12425
MGI:99478
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tbc1d19
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67249
MGI:1914499
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Stim2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:116873
MGI:2151156
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG666377
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666377
MGI:3645115
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 157 ESTs
name
LOC666380
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666380
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
EG666405
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666405
MGI:3645949
definition
note
: predicted gene, EG666405
pseudo
: _no_value
name
Rbpj
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124286784
GeneID:19664
MGI:96522
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: recombination signal binding protein for immunoglobulin kappa J region
transcript_id
: NM_001080928.1
name
Rbpj
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124301228
GeneID:19664
MGI:96522
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: recombination signal binding protein for immunoglobulin kappa J region
transcript_id
: NM_009035.4
name
Rbpj
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124286786
GeneID:19664
MGI:96522
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: recombination signal binding protein for immunoglobulin kappa J region
transcript_id
: NM_001080927.1
name
Cckar
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6753305
GeneID:12425
MGI:99478
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cholecystokinin A receptor
transcript_id
: NM_009827.1
name
Tbc1d19
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141801409
GeneID:67249
MGI:1914499
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: TBC1 domain family, member 19
transcript_id
: NM_144517.3
name
Stim2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124487384
GeneID:116873
MGI:2151156
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: stromal interaction molecule 2
transcript_id
: NM_001081103.1
name
EG666377
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94374769
GeneID:666377
MGI:3645115
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 157 ESTs
product
: predicted gene, EG666377
transcript_id
: XM_983460.1
name
Rbpj
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124286785
GeneID:19664
MGI:96522
definition
GO_component
: GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA] [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence ISS]
GO_process
: GO:0001525 - angiogenesis [Evidence IMP]; GO:0030183 - B cell differentiation [Evidence IMP]; GO:0042742 - defense response to bacterium [Evidence IMP]; GO:0001837 - epithelial to mesenchymal transition [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: isoform 3 is encoded by transcript variant 3; RBP-J kappa; recombining binding protein suppressor of hairless
product
: recombining binding protein suppressor of hairless isoform 3
protein_id
: NP_001074397.1
name
Rbpj
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94400775
CCDS:CCDS19292.1
GeneID:19664
MGI:96522
definition
GO_component
: GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA] [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence ISS]
GO_process
: GO:0001525 - angiogenesis [Evidence IMP]; GO:0030183 - B cell differentiation [Evidence IMP]; GO:0042742 - defense response to bacterium [Evidence IMP]; GO:0001837 - epithelial to mesenchymal transition [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1; RBP-J kappa; recombining binding protein suppressor of hairless
product
: recombining binding protein suppressor of hairless isoform 1
protein_id
: NP_033061.3
name
Rbpj
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124286787
GeneID:19664
MGI:96522
definition
GO_component
: GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA] [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence ISS]
GO_process
: GO:0001525 - angiogenesis [Evidence IMP]; GO:0030183 - B cell differentiation [Evidence IMP]; GO:0042742 - defense response to bacterium [Evidence IMP]; GO:0001837 - epithelial to mesenchymal transition [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2; RBP-J kappa; recombining binding protein suppressor of hairless
product
: recombining binding protein suppressor of hairless isoform 2
protein_id
: NP_001074396.1
name
Cckar
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753306
CCDS:CCDS19293.1
GeneID:12425
MGI:99478
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004951 - cholecystokinin receptor activity [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007409 - axonogenesis [Evidence IMP]; GO:0030900 - forebrain development [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0001764 - neuron migration [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
product
: cholecystokinin A receptor
protein_id
: NP_033957.1
name
Tbc1d19
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21362289
CCDS:CCDS19294.1
GeneID:67249
MGI:1914499
definition
codon_start
: 1
product
: TBC1 domain family, member 19
protein_id
: NP_653100.1
name
Stim2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124487385
GeneID:116873
MGI:2151156
definition
GO_component
: GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0008150 - biological_process [Evidence ND]; GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0051924 - regulation of calcium ion transport [Evidence ISS]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: stromal interaction molecule 2
protein_id
: NP_001074572.1
name
EG666377
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94374770
GeneID:666377
MGI:3645115
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_988554.1
name
LOC666380
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666380
definition
number
: 3
pseudo
: _no_value
name
LOC666380
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666380
definition
number
: 2
pseudo
: _no_value
name
LOC666380
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666380
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-058B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-169M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166P01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-330J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-526D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493J14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-486D12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-364J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-410F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-187G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-328B13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-376F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-236A16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-457A03
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-156P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-188I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-184H22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376P01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-213I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458P16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-152I05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546J20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-541A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-298O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-383M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384G12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-143J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522L08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-482D21
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-154J05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345L03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191G12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-326J05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378L04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-213F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-105I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-445A07
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-151B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344G12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-325M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423K01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-196P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433K18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118B12
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-382G06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-342C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118I18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-467O03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112H04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233I02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-109F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-454H13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-126E14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474K14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346D09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-201N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-471M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-189F05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-110N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-132E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-075N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532L06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-318I23
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-290E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-466O15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-411G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291K03
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-534F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-204D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-365J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-412P04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131N24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158L16
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-337G11
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-216L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-075B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-391N13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-097H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-309A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-214N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131L20
singlet/doublet
doublet
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