BAC Information

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BAC

Clone NameMSMg01-423K16
Chromosome5 (Build37)
Map Location 111,528,974 - 111,710,076
singlet/doubletdoublet
Overlap geneTtc28
Upstream genePlcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
Downstream genePitpnb, Mn1, A230057G18Rik, Cryba4, Crybb1, Tpst2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423K16.T7 (MSMg01no423_k16.b1)MSMg01-423K16.TJ (MSMg01no423_k16.g1)
ACCAG517769AG517770
length747741
length of high quality
(start - end)		403 (57 - 459)241 (63 - 303)
definitionCHROMAT_FILE: MSMg01no423_k16.b1 PHD_FILE: MSMg01no423_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:24 2005CHROMAT_FILE: MSMg01no423_k16.g1 PHD_FILE: MSMg01no423_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,709,674 - 111,710,076)(111,528,974 - 111,529,202)
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTAACCCCTCG
CATTCCACATCTCCTCAAAGCTGCCTCTTCTCTAAAAGGGCTTTGCCCTC
GGTGGCTGACACTGTCACTTAGCTGGGGAAGGTGGCAGGGCGTGAGAGGA
CAATGAGCAGAGGGCTCTGGAGACACCTGGATCAGCCAGCGGCAGGGCTG
TGAGCCCTAAGAACCTGTCTGTAGACCTTGCCTGCTCAGAGGTCCTGGCC
CTTCTTTCTCTTCATGGAGGCAGGGGAAGCCACACTCCACATTTCTGACG
GGCCTGTCTGGGTCCGTCACTCTTTCTGTCCAGCCTGCACTTAGCACCTG
GCTCTACTTACCCGGCTGATAAGCTGTTCTCCCGTCTCTGAGGCCGTGAT
GAGTTTGCACAGTGCTTGGAGGGCTGGGTTGGGCAGACCTGAGCAGGGAC
AGAGGAGCAGAAGTCACCTTCCAAGGAGTGAGTTCCAGGTGCTCGGCCCT
GAGGGTGGTTAGCTACAGGTTGGTCTGGCCAGTGACATTGTCCTGTGTGG
CCTGCGATAGGAACATGTGGCCCTCCTAAAATAGGATCCCTGAACCCGCG
TTTCACTCTCCTGACCCCGGCTTTGCCTAAGACCTCATCCGATGGTGCTC
CTTCTGTCCCCCGTTTTTTTTCCCCCCCCCTCCCAAATTCTTAACTTTTT
TTCCCCCGTGTTTTCCCCCCGTTCCTTCTTTTCCTTTTTTCTCTGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACTACCACTGCATCCTGAAGGCAGGGGACAGCAGTTGG
GGTGGGAGAACCCTGTCAGAGACCTAAGATGCCGCCTGACACACCACCCT
CAGCTTTTGGTTGGTGAAAAATCTGTAGTTTTACTATTTGTTCCAAAAGA
GAATGGCTGTTTACTAGACTAAAGATGGTCCAAGACCGATTGCAGTGAGG
CTCTGGACCTTCCATGTTCCAACACCTGCAGTGACCACAATTTTAATGAG
CCAGTTTTTCTCCAAGGTGCAGCTGCTTTCTCGGAATTCTCATTCACAGT
AGGCAACAGACTTATCTGGGAAATATTCCTACTGAGCAAATGTGGAACAA
TTCTAAAACAAATTGATACCGAAACTGTACATTACAAGCCACAGATGAAG
ATGTGTTTAGATACAGGAGTATCTGAACCAGAGTATCAGCTGGAAAGTGG
AGGGTGGTACCCAGCGGAGGGTGCCCAGAAGTGTGGCCTTGTAATGCTCT
GAGGAGTGAGACAGACCAGGACCTTTCAGGAGATGTGTTGCATTGTGAGT
CATGAAAGCCACAAGAGAGGATGAGCGTGGTCATTCCCTCAGGGTAAAGA
ACTGTGTGTAAGGGTGTCTATCTCTGGTTTGTACGTCTTCCTGCTGTTTT
CTCCTCTTTTCTCCCTTTTCTTTGCCCTTTTCCATATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_k16.b1 MSMg01no423_k16.b1 CHROMAT_FILE:
MSMg01no423_k16.b1 PHD_FILE: MSMg01no423_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:24 2005
         (403 letters)



>mm_chr5_111709474_111710276
          Length = 803

 Score =  779 bits (403), Expect = 0.0
 Identities = 403/403 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatctcctcaaagctgcctcttctctaaaagggctttgccctcggtggctgacactgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acatctcctcaaagctgcctcttctctaaaagggctttgccctcggtggctgacactgtc 544

                                                                       
Query: 61  acttagctggggaaggtggcagggcgtgagaggacaatgagcagagggctctggagacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 acttagctggggaaggtggcagggcgtgagaggacaatgagcagagggctctggagacac 484

                                                                       
Query: 121 ctggatcagccagcggcagggctgtgagccctaagaacctgtctgtagaccttgcctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctggatcagccagcggcagggctgtgagccctaagaacctgtctgtagaccttgcctgct 424

                                                                       
Query: 181 cagaggtcctggcccttctttctcttcatggaggcaggggaagccacactccacatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagaggtcctggcccttctttctcttcatggaggcaggggaagccacactccacatttct 364

                                                                       
Query: 241 gacgggcctgtctgggtccgtcactctttctgtccagcctgcacttagcacctggctcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gacgggcctgtctgggtccgtcactctttctgtccagcctgcacttagcacctggctcta 304

                                                                       
Query: 301 cttacccggctgataagctgttctcccgtctctgaggccgtgatgagtttgcacagtgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cttacccggctgataagctgttctcccgtctctgaggccgtgatgagtttgcacagtgct 244

                                                      
Query: 361 tggagggctgggttgggcagacctgagcagggacagaggagca 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tggagggctgggttgggcagacctgagcagggacagaggagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no423_k16.g1 MSMg01no423_k16.g1 CHROMAT_FILE:
MSMg01no423_k16.g1 PHD_FILE: MSMg01no423_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:24 2005
         (241 letters)



>mm_chr5_111528761_111529402
          Length = 642

 Score =  408 bits (211), Expect = e-118
 Identities = 228/241 (94%), Gaps = 12/241 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaccactgcatcctgaaggcaggggacagcagttggggtgggagaaccctgtcagaga 60
           ||||||||||||||||||||||||||||            ||||||||||||||||||||
Sbjct: 214 actaccactgcatcctgaaggcagggga------------tgggagaaccctgtcagaga 261

                                                                       
Query: 61  cctaagatgccgcctgacacaccaccctcagcttttggttggtgaaaaatctgtagtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cctaagatgccgcctgacacaccaccctcagcttttggttggtgaaaaatctgtagtttt 321

                                                                       
Query: 121 actatttgttccaaaagagaatggctgtttactagactaaagatggtccaagaccgattg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 322 actatttgttccaaaagagaatggctgtttactagactaaagatggtccaagactgattg 381

                                                                       
Query: 181 cagtgaggctctggaccttccatgttccaacacctgcagtgaccacaattttaatgagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagtgaggctctggaccttccatgttccaacacctgcagtgaccacaattttaatgagcc 441

            
Query: 241 a 241
           |
Sbjct: 442 a 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space:   146856
Effective search space used:   146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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