Query= MSMg01no424_h08.b1 MSMg01no424_h08.b1 CHROMAT_FILE:
MSMg01no424_h08.b1 PHD_FILE: MSMg01no424_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:25 2005
(608 letters)
>mm_chr5_91803877_91804884
Length = 1008
Score = 1108 bits (573), Expect = 0.0
Identities = 585/589 (99%)
Strand = Plus / Plus
Query: 20 acagcatgctaacctaaacagggcattcacagattagacctgtatgattccagttctctg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 acagcatgctaacctaaacagggcattcacagattagacctgtatgattccagttctctg 279
Query: 80 tgctattgaaataagcaaaatctacagaagccaacaatagaatcatggttggccagcatc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgctattgaaataagcaaaatctacagaagccaacaatagaatcatggttggccagcatc 339
Query: 140 tgagaagaaggctatgagaagttgctagacaataggcacaaagctaattaaacacaatga 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgagaagaaggctatgagaagttgctagacaataggcacaaagctaattaaacacaatga 399
Query: 200 ataaattgaagtatctattatgtaacttcaggcttttaataacaactgtataatacacct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ataaattgaagtatctattatgtaacttcaggcttttaataacaactgtataatacacct 459
Query: 260 taaaatttgttcattaagtggaactgtcaaatgtacttactattacattaaaactagaag 319
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 460 taaaatttgttcaaaaagtggaactgtcaaatttacttactattacattaaaactagaag 519
Query: 320 aaaaatcattaggatcatggcaaggaagattattgaacattgccaatcataagataatga 379
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 520 aaaaatcattaggatcatggcaaggaaggttattgaacattgccaatcataagataatga 579
Query: 380 aataatttcccagggataatatggaaaatgccatcatttataatatttaaaactagactg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aataatttcccagggataatatggaaaatgccatcatttataatatttaaaactagactg 639
Query: 440 aaggaaaacattcaactatatacaattgaccttgttatccttacaagggtgacagaatca 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaggaaaacattcaactatatacaattgaccttgttatccttacaagggtgacagaatca 699
Query: 500 ggcccctataagcatgatctaagataccagtggattccatggtattcccacaacccaccc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ggcccctataagcatgatctaagataccagtggattccatggtattcccacaacccaccc 759
Query: 560 acagctctgaaggatgaaataggaagactgggccagaactggtgactca 608
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 acagctctgaaggatgaaataggaagactgggccagaactggtgactca 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_h08.g1 MSMg01no424_h08.g1 CHROMAT_FILE:
MSMg01no424_h08.g1 PHD_FILE: MSMg01no424_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:25 2005
(500 letters)
>mm_chr5_92003069_92003968
Length = 900
Score = 878 bits (454), Expect = 0.0
Identities = 492/510 (96%), Gaps = 12/510 (2%)
Strand = Plus / Minus
Query: 1 atgccaccgggttaaattattctaattagttaattacagtgctaagcttgattggcagtc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atgccatcgggttaaattattctaattagttaattacagtgctaagcttgattggcagtc 542
Query: 61 attgttgtgtctttctatccaccttccgatctcagtcttccaccctctcttaggattatc 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attgttgtgtctttctatgcaccttccgatctcagtcttccaccctctcttaggattatc 482
Query: 121 cgtgcctctaacttggccactgctgatgtccaacttctcaagactttgcctagagcatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgtgcctctaacttggccactgctgatgtccaacttctcaagactttgcctagagcatat 422
Query: 181 taagttcatgtctcttggatcacagacagaggctagagtcttttccactgtctctgatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taagttcatgtctcttggatcacagacagaggctagagtcttttccactgtctctgatat 362
Query: 241 tgcctcttcacatccgagtttcatgtctggccagatctggtctgtattgaggccaaaagc 300
|||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgccccaacacatctgagtttcatgtctggccagatctggtctgtattgaggccaaaagc 302
Query: 301 attctgaagaaactcactaatccttgtttataccttggctgcacttggctgcaaagctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attctgaagaaactcactaatccttgtttataccttggctgcacttggctgcaaagctct 242
Query: 361 ccctttctaactagaaaaactggtcctgtagaggaagataggtttttttgttttgtttt- 419
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 241 ccctttctaactagaaaaactggtcctgtagaggaagatag-ttttttt-ttttgttttt 184
Query: 420 -gttttttttttt--------aaatattacaccagtgacagactctgctatcaggatact 470
|||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgtttttttttttttttttttaaatattacaccagtgacagactctgctatcaggatact 124
Query: 471 ttgcagctgctcccaggtgttgattgctta 500
||||||||||||||||||||||||||||||
Sbjct: 123 ttgcagctgctcccaggtgttgattgctta 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
