Query= MSMg01no424_i20.b1 MSMg01no424_i20.b1 CHROMAT_FILE:
MSMg01no424_i20.b1 PHD_FILE: MSMg01no424_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:32 2005
(571 letters)
>mm_chr5_121752329_121753299
Length = 971
Score = 888 bits (459), Expect = 0.0
Identities = 459/459 (100%)
Strand = Plus / Minus
Query: 5 gaattcactctgcccacagcagggttatggtcagtacctgagcgcggactgtgcaagcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaattcactctgcccacagcagggttatggtcagtacctgagcgcggactgtgcaagcaa 400
Query: 65 aaccccacatggctttgtcaggagtgttgtgttcacggccacttctcatttcaaaggaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaccccacatggctttgtcaggagtgttgtgttcacggccacttctcatttcaaaggaga 340
Query: 125 aggtgactgtatcgccttcaaccttaagatttaagggggaggaggaaatgaacttttaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggtgactgtatcgccttcaaccttaagatttaagggggaggaggaaatgaacttttaaa 280
Query: 185 aaaagtcaaacaatttccaagagagcaatatatttcagagattggctgattgattgattg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaaagtcaaacaatttccaagagagcaatatatttcagagattggctgattgattgattg 220
Query: 245 ctttatttgtttttatttgattttttgagatggggtctctgtgcagcctggctgtctgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ctttatttgtttttatttgattttttgagatggggtctctgtgcagcctggctgtctgag 160
Query: 305 aactcacagagatccatctgctctgctccctcccttgtctttctccaagcccactgtgtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aactcacagagatccatctgctctgctccctcccttgtctttctccaagcccactgtgtc 100
Query: 365 agtgacaaggcaaagagcagcagctgtggacttggctcagccagacaccccaggcagtga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agtgacaaggcaaagagcagcagctgtggacttggctcagccagacaccccaggcagtga 40
Query: 425 ctgtcactggccagctaaagtaggtacactgtatttgca 463
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ctgtcactggccagctaaagtaggtacactgtatttgca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_i20.g1 MSMg01no424_i20.g1 CHROMAT_FILE:
MSMg01no424_i20.g1 PHD_FILE: MSMg01no424_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:32 2005
(436 letters)
>mm_chr5_121570692_121571527
Length = 836
Score = 745 bits (385), Expect = 0.0
Identities = 425/439 (96%), Gaps = 6/439 (1%)
Strand = Plus / Plus
Query: 1 tgcatgacaggagattcatctagggaggcatcaggaggatgtatcaggggaacagtagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcatgacaggagattcatctagggaggcatcaggaggatgtatcaggggaacagtagct 260
Query: 61 cagaggctcccattagatgagcctcaactgaaccctcagccatgtcaggcagcagcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaggctcccattagatgagcctcaactgaaccctcagccatgtcaggcagcagcttct 320
Query: 121 ccttgttcttgggtaccacagagccagtgtggtcggatgctccgcaagagtcaggtggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgttcttgggtaccacagagccagtgtggtcggatgctccgcaagagtcaggtggat 380
Query: 181 ctctcagccaagaag-agtggatcacgaggaacataagtaacaggatgagtgagaaacct 239
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcagccaagaagca-tggatcacgaggaacataagtaacaggatgagtgagaaacct 439
Query: 240 tattggttatagaaattaaaaagagaggggggtggggaatcaggatagccagaaagggtt 299
|||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 440 tattggggagagaaattaaaaagagaggggggtgg--aattgggatagccagaaagggtt 497
Query: 300 atgatttt-aaaacaaaacaaacacaaa-gggaacaaacaagacaaactcctgaaacaag 357
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 498 atgatttttaaaacaaaacaaacacaaaagggaacaaacaagacaaactcctgaaacaag 557
Query: 358 tgtgcatggaagggcatcccatgccaagggaacagactgagcaaaggccccgaggttgga 417
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 558 tgtgcgtggaagggcatcccatgccaagggaacagactgagcaaagcccccgaggttgga 617
Query: 418 gcttgcctggtctgattaa 436
|| ||||||||||||||||
Sbjct: 618 gcctgcctggtctgattaa 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
