Query= MSMg01no424_j16.b1 MSMg01no424_j16.b1 CHROMAT_FILE:
MSMg01no424_j16.b1 PHD_FILE: MSMg01no424_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:36 2005
(479 letters)
>mm_chr5_20179575_20180451
Length = 877
Score = 911 bits (471), Expect = 0.0
Identities = 477/479 (99%), Gaps = 2/479 (0%)
Strand = Plus / Plus
Query: 1 tttattgatccctttgcataaatatacagctttcattatcagccccaaagtaggagacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttattgatccctttgcataaatatacagctttcattatcagccccaaagtaggagacgg 260
Query: 61 tatttggaaagagaaacagtggcatatttcataggaccacccaattgtagtgtgagcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttggaaagagaaacagtggcatatttcataggaccacccaattgtagtgtgagcatc 320
Query: 121 tcactgccaagagcacacacgtgtggaaaattacagatatcaatcctgaaaagcaccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactgccaagagcacacacgtgtggaaaattacagatatcaatcctgaaaagcaccagt 380
Query: 181 gtttagtgagatcctgagcacttggaggtctcattttcctcttctgaaccaaataagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttagtgagatcctgagcacttggaggtctcattttcctcttctgaaccaaataagaaa 440
Query: 241 acattgagactgtccctgtaatgcttggaaagaagcaaagcattggtagttttgctcctc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattgagac-gtccctgtaatgcttggaaagaagcaaagcattggtagttttgctcctc 499
Query: 301 caggtatattcttagagggtgccatcgggtacagcctggcaagctgcacctggtgggttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caggtatattcttagagggtgccatcgggtacagcctggcaagctgcacctggtgggttt 559
Query: 361 tctttatcaagttctaatagatgtccctccccctccccaggccccgccctcaccccaccc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 tctttatcaagttctaatagatgtccctccccctccccaggccccgccctcacccc-ccc 618
Query: 421 acatccacaactagggtggagaaatggtgttataaagcctgttaggtgctgtcccacaa 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acatccacaactagggtggagaaatggtgttataaagcctgttaggtgctgtcccacaa 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 877
Length adjustment: 10
Effective length of query: 469
Effective length of database: 867
Effective search space: 406623
Effective search space used: 406623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_j16.g1 MSMg01no424_j16.g1 CHROMAT_FILE:
MSMg01no424_j16.g1 PHD_FILE: MSMg01no424_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:36 2005
(540 letters)
>mm_chr5_20351122_20352062
Length = 941
Score = 891 bits (461), Expect = 0.0
Identities = 485/495 (97%), Gaps = 5/495 (1%)
Strand = Plus / Minus
Query: 1 tgagaaggaaaggtacgttgtctcagtaaagtacttattatttctcatatttctttagtg 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgagaaggaaaggtatgttgtctcagtaaagtacttattatttctcatatttctttagtg 436
Query: 61 tagcttaaggtggccccaccttcctgagcagtggtcccttatcatacaggccactgacct 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tagcttaaggtggccccatcttcctgagcagtggtcccttatcatacaggccactgacct 376
Query: 121 gctcagctggtctccactcaggttaaagattacttcatcttgaccagaagtttgctttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gctcagctggtctccactcaggttaaagattacttcatcttgaccagaagtttgctttat 316
Query: 181 ttaacttctcctgctgttggatc-ttttttttttttttaactaattttaagccaaaattt 239
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgaacttctcctgctgttggatctttttttttttttttaactaattttaagccaaaattt 256
Query: 240 atttatctttttgtgtttgtgtgcgcatccacccttttcttttcc----tctttctttct 295
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 255 atttatcaatttgtgtttgtgtgcgcatccacccttttcttttcctctttctttctttct 196
Query: 296 tttatttatttttatttatttatttttttgagatggtctacctcactgctttagaacttg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tttatttatttttatttatttatttttttgagatggtctacctcactgctttagaacttg 136
Query: 356 ccaagtaccctagactggctggctagccggcttcagggatcttagtgggtgtgctgtcat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ccaagtaccctagactggctggctagccggcttcagggatcttagtgggtgtgctgtcat 76
Query: 416 gcctgactttttcatgtgggttctgaggagacagtgcaaaccctcactgctttcaaggca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gcctgactttttcatgtgggttctgaggagacagtgcaaaccctcactgctttcaaggca 16
Query: 476 agtacttaaatgact 490
|||||||||||||||
Sbjct: 15 agtacttaaatgact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
