Query= MSMg01no424_j19.b1 MSMg01no424_j19.b1 CHROMAT_FILE:
MSMg01no424_j19.b1 PHD_FILE: MSMg01no424_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:36 2005
(608 letters)
>mm_chr5_21502920_21503929
Length = 1010
Score = 1102 bits (570), Expect = 0.0
Identities = 600/610 (98%), Gaps = 2/610 (0%)
Strand = Plus / Plus
Query: 1 ttttattataaacaaacacaatgaaactttgattaggttctgagacagggacttgtcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttattataaacaaacacaatgaaactttgattaggttctgagacagggacttgtcaag 260
Query: 61 gtaaatactcactacttctgttggcacgtcctcacaggatgaaaaacaacatgctttaag 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaatactcactacttctgttggcatgtcctcacaggatgaaaaacaacatgctttaag 320
Query: 121 gagagtgagggagagcagagtgaagccaagttacagggagggaattctaaaacactatag 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagtgagggagagcagagtaaagccaagttacagggagggaattctaaaacactatag 380
Query: 181 aaaatgcataaaacacaggctgggcttggagcacacttagtgtgtgcaaggtctgggcta 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgcataaaacacaggctgggcttggggcacacttagtgtgtgcaaggtctgggcta 440
Query: 241 ggcctccaacacgccacaaaaacaagccccaaacgaccagtgagacagacgagccttatc 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ggcctccaacacgccacaaaaacaagccccaaaccaccagtgagacagacgagccttatc 500
Query: 301 taggatgacttgaaagcagcggttcataacatcactctcagatcaaaatactcagccaat 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 taggatgacttgaaagcagcggttcaaaacatcactctcagatcaaaatactcagccaat 560
Query: 361 tttaatttaactatgggagagcttcatgaacaccataatgctataggaacaatttctgag 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tttaatttaactatgggagagcttcatgaacaccataatgccataggaacaatttctgag 620
Query: 421 actcctccaaaactagccaactgtctcccttaccaatagagctgaaaggcttcgccatcc 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcctccaaaactagctaactgtctcccttaccaatagagctgaaaggcttcgccatcc 680
Query: 481 taagcctgtggagcctttattcaagtgt-cc-cttctttaacagaatatcaaaaacctgt 538
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 681 taagcctgtggagcctttattcaagtgtgcctcttctttaacagaatatcaaaaacctgt 740
Query: 539 gcgtccttcagcctgctctggaaagacccctgctgcgtaaataccttgaactgcagcaca 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcatccttcagcctgctctggaaagacccctgctgcgtaaataccttgaactgcagcaca 800
Query: 599 tatccaggtt 608
||||||||||
Sbjct: 801 tatccaggtt 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1010
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1000
Effective search space: 598000
Effective search space used: 598000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_j19.g1 MSMg01no424_j19.g1 CHROMAT_FILE:
MSMg01no424_j19.g1 PHD_FILE: MSMg01no424_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:37 2005
(245 letters)
>mm_chr5_21680761_21681405
Length = 645
Score = 435 bits (225), Expect = e-126
Identities = 240/245 (97%)
Strand = Plus / Minus
Query: 1 tcacatcacctccaatttcctggcatttgtaaatcgtgcaaagctccatgtttcagggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcacatcacctccaatttcctggcatttgtaaatcgtgcaaagctccatgtttcagggaa 386
Query: 61 atgaaaagaattttatgttcctttacagagtgttgttaggattgagttgattcctgaaga 120
||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 385 atgaaaagaattttacgttcctttacggagtgctgttaggattgagttgattcctgaaga 326
Query: 121 ccccaacaacagtgcttaacaggcagcaaattttaattctaaacagatgcttcaataata 180
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 ccccaacaacagtgcttagcaggcggcaaattttaattctaaacagatgcttcaataata 266
Query: 181 accatggtatatactggctacactattgtttctgtggctattgtcttttattggctattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accatggtatatactggctacactattgtttctgtggctattgtcttttattggctattg 206
Query: 241 gaaag 245
|||||
Sbjct: 205 gaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
