Query= MSMg01no424_o02.b1 MSMg01no424_o02.b1 CHROMAT_FILE:
MSMg01no424_o02.b1 PHD_FILE: MSMg01no424_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:56 2005
(547 letters)
>mm_chr5_90946539_90947486
Length = 948
Score = 978 bits (506), Expect = 0.0
Identities = 531/544 (97%), Gaps = 9/544 (1%)
Strand = Plus / Minus
Query: 5 gaattctggaattatgcagaaaaaataagtgctcatatacccaaagcttttagaaaagaa 64
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaattctggaaatatgtagaaaaaataagtgctcatatacccaaagcttttagaaaagaa 619
Query: 65 gtttttagtgacggttgataatcttaaaatattaatgccaattgaaccaatcccttgaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtttttagtgacggttgataatcttaaaatattaatgccaattgaaccaatcccttgaat 559
Query: 125 tctggggctatactgagatcttgactctgtatgttgaatcttttttcagtccatagaatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tctggggctatactgagatcttgactctgtatgttgaatcttttttcagtccatagaatt 499
Query: 185 atctgtggtcctgccatgcctggccttcagtatgttgagctgtatccttttcgcagttga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atctgtggtcctgccatgcctggccttcagtatgttgagctgtatccttttcgcagttga 439
Query: 245 tttgaattatttggtcaggaatggatgtttaaactcaccaagccatttcctgggtctttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttgaattatttggtcaggaatggatgtttaaactcaccaagccatttcctgggtctttc 379
Query: 305 gagatgctcacaagggttgtgttctttttctgtattgcagtgtgccatctttatgactgt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 378 gagatgctcacaagggttgtgttctttttctgtattgcagtgtgccatctttattactgt 319
Query: 365 gtgtgtgctcagacatttttcatcgctaaagaaaacctcgctggatcacagtgactgatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtgtgtgctcagacatttttcatcgctaaagaaaacctcgctggatcacagtgactgatg 259
Query: 425 cttttgacgtgc-gctgaaatccacttcctcaggaaccttgctaagggttttttgttttt 483
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 cttttgacgtgctgctgaaatccacttcctcaggaaccttgctaaggg--------tttt 207
Query: 484 tttttctcacaggattaccagaccataatttttttcagtgtacttcagtggcttcggtac 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 206 tttttctcacaggattaccagaccataatttttttcagtgtacttcagtggctttggtac 147
Query: 544 cagg 547
||||
Sbjct: 146 cagg 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space: 503706
Effective search space used: 503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_o02.g1 MSMg01no424_o02.g1 CHROMAT_FILE:
MSMg01no424_o02.g1 PHD_FILE: MSMg01no424_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:56 2005
(511 letters)
>mm_chr5_90797407_90798317
Length = 911
Score = 988 bits (511), Expect = 0.0
Identities = 511/511 (100%)
Strand = Plus / Plus
Query: 1 atgttccaccctcttgataccagtgaaatgccatgtgatcttgaaactatttgttgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttccaccctcttgataccagtgaaatgccatgtgatcttgaaactatttgttgctgt 260
Query: 61 tatcagaatctgaagagagagtttgagaggctgatcctgtctcaacatcccaagtgctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcagaatctgaagagagagtttgagaggctgatcctgtctcaacatcccaagtgctca 320
Query: 121 gattgcagacgtgaaccaccacacacagcttcagattacattttgactccctaactttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgcagacgtgaaccaccacacacagcttcagattacattttgactccctaactttac 380
Query: 181 ctggtgcttcaagtattaaacatctattattaaagtttccaagagagtcccagtataaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtgcttcaagtattaaacatctattattaaagtttccaagagagtcccagtataaga 440
Query: 241 attcccttctgttgcctaatttccaagtagttgggcgggggtgggggagagtacaaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcccttctgttgcctaatttccaagtagttgggcgggggtgggggagagtacaaatga 500
Query: 301 aggccaaaaatatcaccatattaatgataggaggaaattgcctgaggtagcatattcatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggccaaaaatatcaccatattaatgataggaggaaattgcctgaggtagcatattcatc 560
Query: 361 accaataaggatataaaagcagggctgagaggtggctcagtagttaagagcacatactgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accaataaggatataaaagcagggctgagaggtggctcagtagttaagagcacatactgc 620
Query: 421 tcttatacagaaactgaagttcaattcccagtgcccatgttaggtggctcatgaccacct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttatacagaaactgaagttcaattcccagtgcccatgttaggtggctcatgaccacct 680
Query: 481 gtaattacaaacacctctggaaaaaggcaga 511
|||||||||||||||||||||||||||||||
Sbjct: 681 gtaattacaaacacctctggaaaaaggcaga 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
