Query= MSMg01no425_d16.b1 MSMg01no425_d16.b1 CHROMAT_FILE:
MSMg01no425_d16.b1 PHD_FILE: MSMg01no425_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:23 2005
(592 letters)
>mm_chr5_18840539_18841535
Length = 997
Score = 1050 bits (543), Expect = 0.0
Identities = 579/593 (97%), Gaps = 6/593 (1%)
Strand = Plus / Minus
Query: 5 gaattctctcctgtcacctcttctgggtgttttccagaaaaattagagaaacagatcaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gaattctctcctgtcacctcttctgggtgttttccagaaaaattagagaaacagatcaag 764
Query: 65 ggtatagactctgaagccagaccacttacattgaagtccaaatactccttcatagagttg 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 763 ggtatagactctgaagccagaccacctacattgaagtccaaatactccttcatagagttg 704
Query: 125 acatgactttgagtaaatgatgtcaccttggacaggaactcatacgttc-tttttctcat 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 703 acatgactttgagtaaatgatgtcaccttggacaggaactcatacgttcttttttctcat 644
Query: 184 catcaaatctggattaactcagttaataaactcaaaaacctattgaaatagcatcaagca 243
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 643 catcaaatctggattaactgagttaataaactcaaaaacctattaaaatagcatcaagca 584
Query: 244 caatcaaagtgttcatcaaattacagttatcgttagggtcgctgtaatacagcttcacaa 303
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 583 caatcaaagtgttcatcaaattacagctatcgttagggttgctgtaatacagcttcacaa 524
Query: 304 aactt----agcccaatcacctccctcatcctcagcatcatatgtctattaatgacactg 359
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aacttagtaagcccaatcacctccctcatcctcagcatcatatgtctattaatgacactg 464
Query: 360 ggagaattacttgctcagcgtatctgaagtgctcagggtgcatcaaaggaaactcaataa 419
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 463 ggagaattacttgctcagtgtatctgaagtgttcagggtgcatcaaaggaaactcaataa 404
Query: 420 acttcccatcaattaaatcaactaaggctaaaatttctttcctttttttgattatttttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acttcccatcaattaaatcaactaaggctaaaatttctttcctttttttgattatttttt 344
Query: 480 aaagatattttctttatttacatttcaaatgttatcccctttcctactttcccctccaaa 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 -aagatattttctttatttacatttcaaatgttatcccctttcctactttcccctccaaa 285
Query: 540 aatcctctatcccctcctccctcccctgtttcccaacccacccactcctgctt 592
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 284 aatcctctatcccctcctccctcccctgttccccaacccacccactcctgctt 232
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 997
Length adjustment: 10
Effective length of query: 582
Effective length of database: 987
Effective search space: 574434
Effective search space used: 574434
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_d16.g1 MSMg01no425_d16.g1 CHROMAT_FILE:
MSMg01no425_d16.g1 PHD_FILE: MSMg01no425_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:23 2005
(497 letters)
>mm_chr5_18673589_18674485
Length = 897
Score = 901 bits (466), Expect = 0.0
Identities = 475/478 (99%)
Strand = Plus / Plus
Query: 20 agagacagagacagagacagagacagagagacagagagagaatgagaatcaaccatatcc 79
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agagagagagacagagacagagacagagagacagagagagaatgagaatcaaccatatcc 279
Query: 80 cacattcccacatttatgtttctgcaaacatttgttcattgtttcatccccttgtgctaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cacattcccacatttatgtttctgcaaacatttgttcattgtttcatccccttgtgctaa 339
Query: 140 gcattaaacattaattatgttattaatacactttaactgtgattcaataaatataagaaa 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gcattaaacattaattatgttattaatacactttaactgtgattcaataaatataagaaa 399
Query: 200 gaaataagaagagatgcttaaaatgtcatttccagtacagtgagaaacaggtgagcagac 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaaataagaagagatgcttaaaatgtcatttccagtacagtgagaaacaggtgagcagac 459
Query: 260 aacaataagaactcattggaatatacaccacaacaccaactgtgggtctagagatgcttt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aacaataagaactcattggaatatacaccacaacaccaactgtgggtctagagatgcttt 519
Query: 320 cttcctttattgtttttcaggggttttgaatatttttatatctttattctttgacaattc 379
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 520 cttcctttattgtttttcatgggtttttaatatttttatatctttattctttgacaattc 579
Query: 380 atacatatctaatatgtagcttaatcattttcacaccagtattactctcttatcccatca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atacatatctaatatgtagcttaatcattttcacaccagtattactctcttatcccatca 639
Query: 440 tttctgctgaactcttcatacccacaagttcctttgtacttttctatttttccaaaca 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tttctgctgaactcttcatacccacaagttcctttgtacttttctatttttccaaaca 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
