BAC Information

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BAC

Clone NameMSMg01-425K18
Chromosome5 (Build37)
Map Location 58,108,825 - 58,109,199
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
Downstream genePcdh7, LOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425K18.T7 (MSMg01no425_k18.b1)MSMg01-425K18.TJ (MSMg01no425_k18.g1)
ACCAG519298AG519299
length755749
length of high quality
(start - end)		596 (34 - 629)379 (63 - 441)
definitionCHROMAT_FILE: MSMg01no425_k18.b1 PHD_FILE: MSMg01no425_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:57 2005CHROMAT_FILE: MSMg01no425_k18.g1 PHD_FILE: MSMg01no425_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAACTA
AAGTTCAAAAAAATTAAATAAAATAACAGACCTGTCTCAAAAGGACACAA
ATATATTACAAGGGAAGTCCAGTTATAACTAGAAGTCTTTTATTGACCCG
AAGAGCCCAAATTATACAATCTGGATCTTGTTTCTGGAGCTGGGTAACTT
AGGTCTTAGCCTGCTGCACGGTTCCCTTTTCTGATAGAGATGCCATCCAA
GGATGTCCTAATGTCCTTGTTTTTAACTATTGTGGCTTTCTGAATCACAG
CCACTGAATCAGAAACAAGTTCAATATCATTTTCTTCAAGGATTAATTCG
TCCTTCTTCTGGGCTTGAGAAAAAGAGCAAGTAACCTGTCCTTATCTGAA
CCCTGAGGGTGTATTTTTTTTCACCCAAGAAATTACGGATTTCAACCGAA
GACTCACTCTGCTGTATAACGACTTGATGGGGAGGTGAGCACATACAGAC
AGCTTCTTGATGGGAATCCCAGCCTAAGACCCTTGATAGTGCTCTGAACA
TGACTGCAGATGGTTCTGGCGGTGGCCAGTTCCTTTCTGTTACCCCACTC
TTTGTTGATTTGGACCCTCTGCTTTTTCTTTCCAGGAGACTCAGCTCTAC
CTTGATGTGATTGAAAGTCCTCCGGAGGGNTCCCCCTGTACCCCTCACAA
TGACTGTGTGCTCCCTCAGAGTGATGACATTTTCTGGAAGGCCGAAAGAT
TGCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACCCGCCGCGCCAGGGCACTTCCGAGACAACAGCCGAC
TGGCACTTTTTCTCCCTTTGGCAAACTAGATTTTTTTTTTTTTTAAGCTA
CTTGGCAGCTCTGTTTGACTCCACCTCCCCCTCCACCCCCGCCTCAGTGG
CTTTGGCTTTTCTTTGGAAATCCGGACAGAATTGGGCATCTTTGTTAATT
GCCGTTAGGAGTGCCCGGTCGTGAGCTTTCACCGGGCCAGTGTCGCGCGG
ATGCACGGAGCCAGGCTTGCTCACCTTTGAACTGCAAAGGGATCAAGTTC
AGCTCGAGTTCCCCGCATTGAGACTGGAAGAAGCTGAGAGACTGTGCTGG
AGAGAGTGAGAGAGGGGGGGAAAGGGGAAAGGAGAGGAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_k18.g1 MSMg01no425_k18.g1 CHROMAT_FILE:
MSMg01no425_k18.g1 PHD_FILE: MSMg01no425_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:57 2005
         (379 letters)



>mm_chr5_58108625_58109401
          Length = 777

 Score =  710 bits (367), Expect = 0.0
 Identities = 374/377 (99%), Gaps = 2/377 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccgccgcgccagggcacttccgagacaacagccgactggcactttttctccctttggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccgccgcgccagggcacttccgagacaacagccgactggcactttttctccctttggc 260

                                                                       
Query: 61  aaactagattttttttttttttaagctacttggcagctctgtttgactccacctccccct 120
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactagatttttttttttt--aagctacttggcagctctgtttgactccacctccccct 318

                                                                       
Query: 121 ccacccccgcctcagtggctttggcttttctttggaaatccggacagaattgggcatctt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccacccccgccccagtggctttggcttttctttggaaatccggacagaattgggcatctt 378

                                                                       
Query: 181 tgttaattgccgttaggagtgcccggtcgtgagctttcaccgggccagtgtcgcgcggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgttaattgccgttaggagtgcccggtcgtgagctttcaccgggccagtgtcgcgcggat 438

                                                                       
Query: 241 gcacggagccaggcttgctcacctttgaactgcaaagggatcaagttcagctcgagttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcacggagccaggcttgctcacctttgaactgcaaagggatcaagttcagctcgagttcc 498

                                                                       
Query: 301 ccgcattgagactggaagaagctgagagactgtgctggagagagtgagagagggggggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccgcattgagactggaagaagctgagagactgtgctggagagagtgagagagggggggaa 558

                            
Query: 361 aggggaaaggagaggag 377
           |||||||||||||||||
Sbjct: 559 aggggaaaggagaggag 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 777
Length adjustment: 9
Effective length of query: 370
Effective length of database: 768
Effective search space:   284160
Effective search space used:   284160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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