BAC Information

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BAC

Clone NameMSMg01-425N05
Chromosome5 (Build37)
Map Location 30,519,394 - 30,519,907
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb
Downstream geneGpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425N05.T7 (MSMg01no425_n05.b1)MSMg01-425N05.TJ (MSMg01no425_n05.g1)
ACCAG519416AG519417
length7471,136
length of high quality
(start - end)		519 (40 - 558)---
definitionCHROMAT_FILE: MSMg01no425_n05.b1 PHD_FILE: MSMg01no425_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:09 2005CHROMAT_FILE: MSMg01no425_n05.g1 PHD_FILE: MSMg01no425_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ACTATTATTCCCAGGTGACTGGGCATTCAGCAACAGTGAAACTTTTGACA
GTGCTCTCTGAAACAGGAAATAAAGGACATTTGCTCAGCCTGAGGGAGGG
ACCCAGACGCTGTGTATTACCGACTATAAAAAGTACTACTGTAAAAAGTA
ATGTCAGACGTTGGGAAGTGCTTTACAATAAACTCCCAATTTTACATGTA
CTTATATAACCACAATAAAAAGTTGACTGCACATGAGCCTGTGTGTTTCA
TAGCAGAACAATAAAATTGATGGCAACTTTAGAACTTCTACTTAGAGAAT
ATGGACTGTCAGTTTTCTTGTGATCTTATCCAAGACTTGCGTAGTGGCCA
AAATGTCTCTGAAACAGCTATAAGTTCATACCATGCTTCCCATGTTGTCT
TTACAGCATATACAGTTTTCTATACTAGCCAGGCATGGTGGTGTGAGGTT
TTAATCCCAGAGAGAGGTCCGAGGCCAGCCTGGACAGCCACGGCTTCATA
GGAAACCCTGTCTCAAAAACCAAATCAAACAAACAAAACGGGCTTCTATT
ATCTTTCTTGCCCTATCTTCTCTGGTATAGATGTTTTTGCCGCATGTATG
TCCGCGCATCCCATATGTTGCCCTGAATTCTCTGTTTAAAAAGCTTTTTC
CCGCTGGATTGTCTGGGCTCCCATATTTGCAGGCCCCTAAACGTAAA

CCATCCTCATAAATCTTTACTGTTCATTCCAGGATCTCGACCAATAAAAA
CACATGTGACGTAACACGATATTGCACCACCTGCCGACGCTTAAACAAAC
GGAAAACTGCGAAGAGGTCTCGCTGAATAAACAGACTACATGGAACAGAG
GCATAATGAGAGACTCGACCACACACCGACCGCTTAAAAANGAAAGCGAC
TGTACAGAACAGATATATTGAACGCGTACCTGATCAAGCAGCGGCAACCA
CCAAATCAGTCTAAAAGAGAGCACACATACAGGCACACGTCGAAGAAGAA
GCGACGTGTATTATAATAATACACGAAACCACGGAATCGATCAGCAAAGT
TTTGTATTCTCACTTTCTTTCACACAAGGTCCGAGGCCGCGAACACTCTA
CAATGTGTCACTTCCGCCTCACATATTCTATAGCGACGCGCTTGATTATT
CCTCCTCGCGCGCTCCATCCTTATATATGTAATACCGCACTATTTCCGAC
CATATACGCGCATGCTCAGTCCACTTTAGCTCGGTATCCACCGCGTACTA
GTCCCACGCCCTCGCATTTCCTATCAAACAACACACGCCATTAACCGCCT
ATAAAGTGTGTCGTACACAATCACCCGTTATCACAATATCGACGTATCCT
TATATCATAACCTCCTTGTCCAGCCACAATTCCGCAGCCCTATAAATCCC
CATATAACGATTCCCTATACCCTCCATTATGTCCTCCCTCTTATGTGATA
TCCGCCTCTAGATTCTAATTGTCAATACCCAAACGATCTCCGAACCTGTG
TTGTCGAATTAAATTTTGTAAACCACTGGACCAATATCGTTTATTAAAAC
TCGAAACACTCAACACGTGTCATCTTTTCCGACGCAATATCTTTCATCAA
CCCGCACACGACAAGACAGAACAGTCTGTATCATTCATAATAGCCGTTAA
CGAACCCGCGCCACCTCTTCTCTATCGCCGACAGAATATCATCAGCCAAC
ATATATACCTCTTCATCTACATCGCGTGTTGAACCGAACTATGTCACAAA
GACGAATAATCACTGTCGTTCACTACTCACCACGCGCGTAACCAATTTTT
ATTCGACCACTATTCTCATTCGCCCAACTACCTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_n05.b1 MSMg01no425_n05.b1 CHROMAT_FILE:
MSMg01no425_n05.b1 PHD_FILE: MSMg01no425_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:09 2005
         (519 letters)



>mm_chr5_30519190_30520107
          Length = 918

 Score =  951 bits (492), Expect = 0.0
 Identities = 509/518 (98%), Gaps = 7/518 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaactatt---attcccaggtgactgggcattcagcaacagtgaaacttttgaca 61
           |||||||||||||   |    |||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcaactattaaaa----caggtgactgggcattcagcaacagtgaaacttttgaca 663

                                                                       
Query: 62  gtgctctctgaaacaggaaataaaggacatttgctcagcctgagggagggacccagacgc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtgctctctgaaacaggaaataaaggacatttgctcagcctgagggagggacccagacgc 603

                                                                       
Query: 122 tgtgtattaccgactataaaaagtactactgtaaaaagtaatgtcagacgttgggaagtg 181
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 602 tgtgtattaccgactataaaaagtactactgtaaaaagtaatgtcagatgttgggaagtg 543

                                                                       
Query: 182 ctttacaataaactcccaattttacatgtacttatataaccacaataaaaagttgactgc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctttacaataaactcccaattttacatgtacttatataaccacaataaaaagttgactgc 483

                                                                       
Query: 242 acatgagcctgtgtgtttcatagcagaacaataaaattgatggcaactttagaacttcta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acatgagcctgtgtgtttcatagcagaacaataaaattgatggcaactttagaacttcta 423

                                                                       
Query: 302 cttagagaatatggactgtcagttttcttgtgatcttatccaagacttgcgtagtggcca 361
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cttagagaatatggaccgtcagttttcttgtgatcttatccaagacttgcgtagtggcca 363

                                                                       
Query: 362 aaatgtctctgaaacagctataagttcataccatgcttcccatgttgtctttacagcata 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaatgtctctgaaacagctataagttcataccatgcttcccatgttgtctttacagcata 303

                                                                       
Query: 422 tacagttttctatactagccaggcatggtggtgtgaggttttaatcccagagagaggtcc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tacagttttctatactagccaggcatggtggtgtgaggttttaatcccagagagaggtcc 243

                                                 
Query: 482 gaggccagcctggacagccacggcttcataggaaaccc 519
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gaggccagcctggacagccacggcttcataggaaaccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space:   462172
Effective search space used:   462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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