Query= MSMg01no425_p10.b1 MSMg01no425_p10.b1 CHROMAT_FILE:
MSMg01no425_p10.b1 PHD_FILE: MSMg01no425_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:19 2005
(521 letters)
>mm_chr5_8872046_8872965
Length = 920
Score = 888 bits (459), Expect = 0.0
Identities = 508/539 (94%), Gaps = 25/539 (4%)
Strand = Plus / Plus
Query: 3 cggaattccagccaagttccgcttcaacctgttctgatatacaaaacagccatttgtctt 62
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 203 cggaattccagccaagttgtgcttcaacctgttctgatatacaacacagccatttgtctt 262
Query: 63 cagatcccataacaagtccttttatgacaaatccagttttgcttactcagctcagaaccc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagatcccataacaagtccttttatgacaaatccagttttgcttactcagctcagaaccc 322
Query: 123 tggtgctccaggtttgcagacctttgaaagggaggatcactttacagcactgtgctgctg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggtgctccaggtttgcagacctttgaaagggaggatcactttacagcactgtgctgctg 382
Query: 183 agcttggcaaccctggacagacagcaaaggggcagtaagtaccaaactctggtcctcttt 242
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 agcttggcaaccctggacagacagcaa-ggggcagtaagtaccaaactctggtcctcttt 441
Query: 243 gtctctgaccttgtgtcaagttttctggaaattaatgcaagacagagcaacagtattctt 302
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctctctgaccttgtgtcaggttttctggaaattaatgcaagacagagcaacagtattctt 501
Query: 303 acctaaagcattaaaattcttcctacacacacacacacacacacacaca----------- 351
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acctaaagcattaaaattcttcctacacacacacacacacacacacacacacacacacac 561
Query: 352 ---------aacaggagagggggaaggggagacagacagacagacagacagacaacacac 402
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 562 acacacacaaacaggagagggggaaggggagacagacagacagacagaca----acacac 617
Query: 403 acaggagagagtgggggaggggggagacagacagacagacaacacacacacagacacaca 462
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 618 acaggagagagtgggggaggggggagacagacagacagacaacacacacagagacacaca 677
Query: 463 cagacagacagacacacagacacacagagacaggcaggccgacaggtaaacagagacag 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cagacagacagacacacagacacacagagacaggcaggccgacaggtaaacagagacag 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space: 465010
Effective search space used: 465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_p10.g1 MSMg01no425_p10.g1 CHROMAT_FILE:
MSMg01no425_p10.g1 PHD_FILE: MSMg01no425_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:19 2005
(476 letters)
>mm_chr5_9047242_9048117
Length = 876
Score = 890 bits (460), Expect = 0.0
Identities = 472/476 (99%)
Strand = Plus / Minus
Query: 1 agtctcacagagtgaacctgtcaaaattctttgaaaatacaaaagtgaacatctgacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agtctcacagagtgaacctgtcaaaattctttgaaaatacaaaagtgaacatctgacatc 617
Query: 61 aaagagagagcttcggagagcagagccagctgtggggactttgctagcaggactgacgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aaagagagagcttcggagagcagagccagctgtggggactttgctagcaggactgacgtg 557
Query: 121 gtcaaagccagagtgaatttaagtgtcaggaacaaacaataatgtgcatttgactgtgac 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtcaaagccagagtgaattcaagtgtcaggaacaaacaataatgtgcatttgactgtgac 497
Query: 181 aagacgtcaccaagatgataatcttcctttaggaaaatacaatacagcaacacagaaacc 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 496 aagacgtcaccaagatgataatcttcctttaggaaaatataatacagcaacacagaaacc 437
Query: 241 atccgtttaggaaagaaaacatgtttctttaacctactgcccctggtgtgtactcctgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atccgtttaggaaagaaaacatgtttctttaacctactgcccctggtgtgtactcctgac 377
Query: 301 agagaaaaacagctctttgacctgtttatctgcttacaaagattagcagtcaacaattgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agagaaaaacagctctttgacctgtttatctgcttacaaagattagcagtcaacaattgg 317
Query: 361 tttgtcaaactggcagtcggtgccgccgatggactttgtggccaatggatattcatcaag 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 316 tttgtcaaactggcagtcggtgccgccgatggactttgtagccaatggatattcatcaag 257
Query: 421 atcataactactagtattggaaatgactataattgtgaatgcatactgaaacatca 476
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 256 atcataactactagtattggaaatgactataattgttaatgcatactgaaacatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
