Query= MSMg01no426_h05.b1 MSMg01no426_h05.b1 CHROMAT_FILE:
MSMg01no426_h05.b1 PHD_FILE: MSMg01no426_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:59 2005
(459 letters)
>mm_chr5_44845507_44846365
Length = 859
Score = 826 bits (427), Expect = 0.0
Identities = 439/443 (99%)
Strand = Plus / Plus
Query: 17 gaattctctgcaatatgcactctgtttgtcatggggaaccttgagtaaacagacaatgag 76
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctctgcaatatgaactctgttcgtcatggggaaccttgagtaaacagacaatgag 276
Query: 77 aatgccagaccagcaattccctcctttattcctagaaacggcttcctatttcttgctcag 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatgccagaccagcaattccctcctttattcctagaaacggcttcctatttcttgctcag 336
Query: 137 cctccttaattgctttataaggaagattattgttattattattactttttttgccagagt 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cctccttaattgctttataaggaagattattgttattattattactttttttgccagagt 396
Query: 197 gaaatgttttaaatattgcccggatttaaaattggctaaggaggtcagtactgcctgacc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaaatgttttaaatattgcccggatttaaaattggctaaggaggtcagtactgcctgacc 456
Query: 257 cagcttaaatctccaaagagccaatcacagcatattgcacatagacacagctggctgcag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cagcttaaatctccaaagagccaatcacagcatattgcacatagacacagctggctgcag 516
Query: 317 ggagaagattttattttcaaggtgacagtttcatttcagtcgttttgcccacacttggaa 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggagaagattttattttcaaggtgacagtttcatttcagtcgttttgcccacacttggaa 576
Query: 377 gggaaaagagctttctatgaaattaactgagtttctgtctctggttttccaattaagaat 436
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 577 gggaaaagagttttctatgaaattaactgagtttctgtctctgtttttccaattaagaat 636
Query: 437 tgcggtgcagaggcccctttcta 459
|||||||||||||||||||||||
Sbjct: 637 tgcggtgcagaggcccctttcta 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_h05.g1 MSMg01no426_h05.g1 CHROMAT_FILE:
MSMg01no426_h05.g1 PHD_FILE: MSMg01no426_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:59 2005
(494 letters)
>mm_chr5_45045824_45046717
Length = 894
Score = 922 bits (477), Expect = 0.0
Identities = 492/501 (98%), Gaps = 7/501 (1%)
Strand = Plus / Minus
Query: 1 tgggtggcactgtacatttttctctcattactgaacattatatttatcatcagaaggata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggtggcactgtacatttttctctcattactgaacattatatttatcatcagaaggata 506
Query: 61 aggttttttttttaatcataaataaaatacatgggttacattaaggagacattctaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggttttttttttaatcataaataaaatacatgggttacattaaggagacattctaagta 446
Query: 121 atcattagggctgaaattctgtcaacctgtcattgaaaatatgtgtgtacaatgtagtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcattagggctgaaattctgtcaacctgtcattgaaaatatgtgtgtacaatgtagtaa 386
Query: 181 ggcatcaagacagacagagtaattgtgtcacttgatatagaagaaaatgtatattcatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcatcaagacagacagagtaattgtgtcacttgatatagaagaaaatgtatattcatat 326
Query: 241 tcatgaataaaatgtcatccaagagacagtcctccaacaggaatgagcagccagcgtgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcatgaataaaatgtcatccaagagacagtcctccaacaggaatgagcagccagcgtgga 266
Query: 301 tatgttcaagaagtccacaagttatattagacaagtgtcatattagcacgagac------ 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgttcaagaagtccacaagttatattagacaagtgtcatattagcacgagacaaaaaa 206
Query: 355 -aaaaaaaaaaattcaacccgatgcggagttcctgagttagtgtctggcatgctgagttt 413
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 aaaaaaaaaaaattcaacccgatgcagagttcctgagttagtgtctggcatgctgagttt 146
Query: 414 agcagcaggaagagcatggggtatggagggacaatcaaaagaacagctcacaccagtgga 473
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 145 agcagcaggaagagcatggggtattgagggacaatcaaaagaacagctcacaccagtgga 86
Query: 474 ggcctggtgggattgatccat 494
|||||||||||||||||||||
Sbjct: 85 ggcctggtgggattgatccat 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
