BAC Information

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BAC

Clone NameMSMg01-426I10
Chromosome5 (Build37)
Map Location 119,437,310 - 119,437,682
singlet/doubletsinglet
Overlap geneLOC100039488
Upstream geneFbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
Downstream geneEG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426I10.T7 (MSMg01no426_i10.b1)MSMg01-426I10.TJ (MSMg01no426_i10.g1)
ACCAG519945AG519946
length1,564792
length of high quality
(start - end)
---373 (71 - 443)
definitionCHROMAT_FILE: MSMg01no426_i10.b1 PHD_FILE: MSMg01no426_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:06 2005CHROMAT_FILE: MSMg01no426_i10.g1 PHD_FILE: MSMg01no426_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATATCTGTCCGTGGCCCCGCCTANNATACCGNANCNTCCACCNTNANG
ATTTGCAGNAGCACCACCACGCGCCGNCNGNNGNAAATNTCCCCANNGNG
NCCCANNGCTTTTACTGAANCATCAGACAGCACTNANNGNTNGNANGNNA
CCCCACTNGNTCCCTNTNANANANATNACTNGCTCCCCCANTNGNTCGCT
CGNTCGNTAATTNGNTAANTTGNTCGNCNGCTCGCTCACTCGCCCACTCG
CCNGNTNGNTNNATNGNTCANTCTNTNGNTNANTNNATCGNTNGCTCACT
NGNTNCGCTNACTCACTCACTCGCNCGCCCCGCNNCCCCNNCCCCCCNCC
TCTCTCTCCTNCTCCCACTCTCTCTCCCTCCTCTCTCTCCCCTCTTACCT
TATATCTTCNTTCTACATCATTCTCTCTTTCNTCTTCTGCTCCTCCCGCC
TCTCATCTATTCTCCTTCGCTTAATCGCGTACACTGCTGACGTTCCTTCT
CTCCCTCCTCTCGTCTTCCTCTCCTATNTACTNTTTACGCCTATTCATCG
CCTATTCTCTCCNCCTCCTCATCTACCCCTCCTCTCATTCTACTCACGCT
CACTCCTACTTCTCCATCCCTCGCTCTCCTCCCCCCGGCTCTCTCCTATC
CTTCTTTCTCTTTCTTCCGTNACCTCTCGGCTCCTCCTCTACTCTCTCCC
CCCTCACCACGCTCTCCGTCTTATCTCTTCTTCTACCTCTCTCCCTCTCT
CCCATCACTCTCCACTTCACTCTCTCCTATCATCCTCACACTCATCCTAC
TCTCTCATCTCTCTCTCTCTCTCCACCCTCATCTCTCCTACTACCCGCCT
CCACTCNCCCTCCGATATCTTTACTCTTCTATCTCACTGCACTACCACCT
CTCACCGTCACCCGTCTCTCCTCTCCACTATATCTCGTCTCCTCCTCTCT
CTCTCCATACCCTCCTCTCTTACTCACCTCTCCTACCTCTCCTCCGTCCT
CCTACTCCTTTCCTCTCCCTCCCTTCCCACACTCCTCCCCCCTCTTCNTC
CCACTCCACTCTCACACTCTGTACTCCTCTCTCACTCCTCCCTCTACCCT
CCTCTCTCTTATTTCTTCTTCCCTCCCTCTCTCCCTCCCTATACTCTCAC
TCCCTCTCCTCCCCCTCCCTACCTTCTCGTACTCTCCTCTCTCTCCTATC
CCAATCTCCCTCTCATTCTCTCCTCTCCTCTCCTTAGCTCTCTATCTCTC
CTCTTCTCCACTCTACTTCCTCCCTTTACTCTCACCTATATCTCTCCCCC
CACTCTCTTCTCTCCTTCACTATCCGCACCCCTCATTCCTCCTCTCTCAC
TATCCCTTCTCTACGTTACTCCTGTATACATCCGTCCTCTTCTATCATCC
CTCTCTCTTCTTCCTTCTCCTCTACCTCCTACTCATCCCCTCACCTCGCA
CCCTCATCTCTCCCACTCTCTTCCTCCCTCTCCACCCTCATCTCCTCCCC
TATCCTACCTCTCTGCATCACACCATATATACCTCCCCCACATCCCACAC
CTCCTCACCCCCCG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGTCCTTGAACTTACAGGGCAAGCGTTTT
ACCCACTGAGCTGTCTCCTCAGCCCCTCCCGCATCCTTTCTGCAGAGTCT
GGGGGAACTAAGGTGGTGGCGAAAGATGAGACAAGACGCCATGCATTGGA
GACCTGCCGGTGTTGCAGCAGCTGGTGCTGGGTGGTTGAGGGCTGTTGCT
CACAGTGAGTGACCTCCCTAGGCAAGGTGACAGGAAGCCGGAGACAGACA
TCAGCCCAGCAGCCTCCAATTAGTTATCATCTCTGACCCCATCAGAGCTG
GAGGAAATGCTGGCACTTTCCGGCACTCGGGCCCACCTGCCTGGAGGGCT
GGTGGCCTCAGAAGCTAGGGTGGTGGCATCCAAAGGCCCCAGACTAACAG
AGCCCCGCTTATTCTAGAGTTCTGCAAAGGGTTAGTGGTTGGAGGTTTTT
TCTTTTTTTTCTCCCCTTTTTTTTTTCCTTTCTTTCTTTTTTCCTTTTTT
TCTTCTTCTTTACCTTTTTATTCACTTTCCTTATTTTTTCTCTCTTTTCC
TTTCTTTTTCTTTCCTTTCTCTACTTCTCTCTTTCTATCTCCTTTCTCTT
TGTTCTCCTCCCTCCTCTTTTTTTCCTCCTTTTTCTTTTCTCTTCCCTTT
TCCTCCTCCCTTTTATTCCCCTATTTCATTTCCCTTGACCTTTCTCTACT
TCTTTCCCTTTTATTTTTCTACCTTTTTTCACTTTTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_i10.g1 MSMg01no426_i10.g1 CHROMAT_FILE:
MSMg01no426_i10.g1 PHD_FILE: MSMg01no426_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:06 2005
         (373 letters)



>mm_chr5_119437110_119437882
          Length = 773

 Score =  714 bits (369), Expect = 0.0
 Identities = 372/373 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtccttgaacttacagggcaagcgttttacccactgagctgtctcctcagcccctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtccttgaacttacagggcaagcgttttacccactgagctgtctcctcagcccctccc 260

                                                                       
Query: 61  gcatcctttctgcagagtctgggggaactaaggtggtggcgaaagatgagacaagacgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gcatcctttctgcagagtctgggggaactaaggtggtggcgaaagatgagacaagacacc 320

                                                                       
Query: 121 atgcattggagacctgccggtgttgcagcagctggtgctgggtggttgagggctgttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcattggagacctgccggtgttgcagcagctggtgctgggtggttgagggctgttgct 380

                                                                       
Query: 181 cacagtgagtgacctccctaggcaaggtgacaggaagccggagacagacatcagcccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagtgagtgacctccctaggcaaggtgacaggaagccggagacagacatcagcccagc 440

                                                                       
Query: 241 agcctccaattagttatcatctctgaccccatcagagctggaggaaatgctggcactttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcctccaattagttatcatctctgaccccatcagagctggaggaaatgctggcactttc 500

                                                                       
Query: 301 cggcactcgggcccacctgcctggagggctggtggcctcagaagctagggtggtggcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cggcactcgggcccacctgcctggagggctggtggcctcagaagctagggtggtggcatc 560

                        
Query: 361 caaaggccccaga 373
           |||||||||||||
Sbjct: 561 caaaggccccaga 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)