BAC Information

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BAC

Clone NameMSMg01-426I14
Chromosome5 (Build37)
Map Location 117,328,969 - 117,497,850
singlet/doubletdoublet
Overlap geneLOC665073
Upstream geneCit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
Downstream geneSuds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426I14.T7 (MSMg01no426_i14.b1)MSMg01-426I14.TJ (MSMg01no426_i14.g1)
ACCAG519953AG519954
length796789
length of high quality
(start - end)		384 (68 - 451)359 (69 - 427)
definitionCHROMAT_FILE: MSMg01no426_i14.b1 PHD_FILE: MSMg01no426_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:07 2005CHROMAT_FILE: MSMg01no426_i14.g1 PHD_FILE: MSMg01no426_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,328,969 - 117,329,352)(117,497,496 - 117,497,850)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGCATCCGCGGAA
TTCCCAGACCCTACCAGTCTCCACTTAGCAATTTGTCATATTTGGAATAA
TTGGACCCAGATACCCTTCTCGGATATGTCCCGAGTGTTCTGATCTGGTG
TATTCTCTTCTGTACATTAAGCACCAAACCCAGTATGTGAACACTGGATA
AATACCTTCTAGCCTTGTATTGTATGGTCCAGCTTTTATAACACACCTTA
AGAAACACACAAGAAGTAGGTGGATCGCCCCCTGCAACGGAACCAAGCAG
AGTGCACAGTCCATCTGCTCTGTGTTGCCATAACAGAAGACCACAGGCTG
TGTACATTATAAAGAACAGAGTCACAGTTATGAAGGCTGAGAAGTCCAAG
CCTGCATGTTGTACTGTTCCATGGTGGGAGATGGGAGAGAGAGACAGAGA
CAGAGAATCAGAGAGTGGGGGGAGAGAGAAAGATAGAGATACATTATCTA
CCTTCTTTCTTTTTTTCTCTTTTTTTTTTTTACTTTCCTTCTTTCTTTTT
TTCACTTTTTTTTTATTAATTTTCCTCACCTCTTTCTTCATTTTATTTCT
TTTCTCATCTCCCTTATTACATATTCCCATCTTTCCAATATTCCTCTATC
TCACCTCTCCTTTTTGATCTTTTTTTTTTCTTTTTCTCCACCCTATCTTT
CCATCTTATTTACCAACTATCCTTTACCCTTCTCTCTTTTATCCTAATTT
GCCATTACTTTTATTCTCTATTTCTCCTTACTCTTTCTTCTACTTG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACCTTCAGCTGGGAACTAGATACTGTGAGAGC
AGTATCTACTCTTAACCACTAAGCCATCTCTCCTGGCCCAGAAAGAGTCC
CTAAGTGTCAATTTATCCCTAAAAACAACCTTGAACTTGAGTAAGGACCG
ACAAGAATAAAGATGAAGCTGGAAGTCACTTATCACACTCTCCCACCAAC
AAAGAAATACCATTGAGATTGTGTGTGCACACTTATGCGTGTGGGGTGTG
GTCTATGTGTATGCATGTGCATGTGTGTGCACACTCCTGTGGAGGCCAGA
GGTCAATGTTGGAGGTCTTTCTCATTTACTCTGTACTTTTTATTTTAGTT
ATAAATATGTATGGTTTTTTGTCTNTTATATCTATTANAACTGCGTATAA
TTTTCTTTTAATTTTATTTAAATCCTCCTCCCCCCCTCCCAACTAATTCT
TTTTTTATCCACCTCTGTCATAATTGGTTTTCTCTCTTTCTCGCTGGTAT
GACTTGTTCTTCCCTTCTTTGTTTTTAGCATATTATTCTCTCAATTTGTC
CTTACTTCCCTTCTATCTCATTTCTTCCTCTTTTTTTTCTTCCTTTTTTT
TTATATTCCTCCTCTCTCTTTTTTTTCTTCTTTTTCTTTTCTCTCTCTTT
TCCTCCTTATCTTTCTTTCCCTTCTTCTCATTCTCTATTCCTCCTTACTT
CCTTCCACTATTTTCTCCCCTCTTTTTCCTTCTTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_i14.b1 MSMg01no426_i14.b1 CHROMAT_FILE:
MSMg01no426_i14.b1 PHD_FILE: MSMg01no426_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:07 2005
         (384 letters)



>mm_chr5_117328769_117329552
          Length = 784

 Score =  735 bits (380), Expect = 0.0
 Identities = 383/384 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccacttagcaatttgtcatatttggaataattggacccagatacccttctcggatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccacttagcaatttgtcatatttggaataattggacccagatacccttctcggatat 260

                                                                       
Query: 61  gtcccgagtgttctgatctggtgtattctcttctgtacattaagcaccaaacccagtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcccgagtgttctgatctggtgtattctcttctgtacattaagcaccaaacccagtatg 320

                                                                       
Query: 121 tgaacactggataaataccttctagccttgtattgtatggtccagcttttataacacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacactggataaataccttctagccttgtattgtatggtccagcttttataacacacc 380

                                                                       
Query: 181 ttaagaaacacacaagaagtaggtggatcgccccctgcaacggaaccaagcagagtgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaagaaacacacaagaagtaggtggatcgccccctgcaacggaaccaagcagagtgcac 440

                                                                       
Query: 241 agtccatctgctctgtgttgccataacagaagaccacaggctgtgtacattataaagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtccatctgctctgtgttgccataacagaagaccacaggctgtgtacattataaagaac 500

                                                                       
Query: 301 agagtcacagttatgaaggctgagaagtccaagcctgcatgttgtactgttccatggtgg 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 agagtcacagttatgaaggctgagaaatccaagcctgcatgttgtactgttccatggtgg 560

                                   
Query: 361 gagatgggagagagagacagagac 384
           ||||||||||||||||||||||||
Sbjct: 561 gagatgggagagagagacagagac 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_i14.g1 MSMg01no426_i14.g1 CHROMAT_FILE:
MSMg01no426_i14.g1 PHD_FILE: MSMg01no426_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:07 2005
         (359 letters)



>mm_chr5_117497337_117498095
          Length = 759

 Score =  679 bits (351), Expect = 0.0
 Identities = 354/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttcagctgggaactagatactgtgagagcagtatctactcttaaccactaagccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 accttcagctgggaactagatactgtgagagcagtatctactcttaaccactaagccatc 455

                                                                       
Query: 61  tctcctggcccagaaagagtccctaagtgtcaatttatccctaaaaacaaccttgaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctcctggcccagaaagagtccctaagtgtcaatttatccctaaaaacaaccttgaactt 395

                                                                       
Query: 121 gagtaaggaccgacaagaataaagatgaagctggaagtcacttatcacactctcccacca 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gggtaaggaccgacaagaataaagatgaagctggaagtcacttatcacactctcccacca 335

                                                                       
Query: 181 acaaagaaataccattgagattgtgtgtgcacacttatgcgtgtggggtgtggtctatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acaaagaaataccattgagattgtgtgtgcacacttatgcgtgtggggtgtggtctatgt 275

                                                                       
Query: 241 gtatgcatgtgcatgtgtgtgcacactcctgtggaggccagaggtcaatgttggaggtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtatgcatgtgcatgtgtgtgcacactcctgtggaggccagaggtcaatgttggaggtct 215

                                                                  
Query: 301 ttctcatttactctgtactttttattttagttataaatatgtatggttttttgtc 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttctcatttactctgtactttttattttagttataaatatgtatggttttttgtc 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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