Query= MSMg01no426_k19.b1 MSMg01no426_k19.b1 CHROMAT_FILE:
MSMg01no426_k19.b1 PHD_FILE: MSMg01no426_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:18 2005
(433 letters)
>mm_chr5_83376538_83377370
Length = 833
Score = 700 bits (362), Expect = 0.0
Identities = 374/378 (98%), Gaps = 2/378 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatctaatatgacatcattttcctccttatttatcaatatttgattcatctagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggaattcatctaatatgacatcattttcctccttatttatcaatatttgattcatctagg 318
Query: 64 ccatggccagtttcaagaagaacaattcatgaattcaaaacctgatttttagtaaccctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccatggccagtttcaagaagaacaattcatgaattcaaaacctgatttttagtaaccctt 258
Query: 124 tatgatcttcagaatttaattaggcaatgcttgtcttttgtttcctttacttgactatct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tatgatcttcagaatttaattaggcaatgcttgtcttttgtttcctttacttgactatct 198
Query: 184 ctcattagaaaacaaacaagacaaatgaaggataaataaaataagattaaaaaa-aaact 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 197 ctcattagaaaacaaacaagacaaatgaaggataaataaaataagattaaaaaagaaact 138
Query: 243 aacacatcagaacaggagaaaataaaggcagaaggaaaagaacccaattaaaaaaaaaac 302
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 137 aacacatcagaacaggagaaaataaaggcagaaggaaaagaacccaatt-aaaaaaaaat 79
Query: 303 acaataaacacaggtgcagaggcccactagttgctgtatttagcaatgtcataaatacaa 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 78 acaataaacacaggtgcagaggcccactagttgctgtattcagcaatgtcataaatacaa 19
Query: 363 tgaaggggaagccataat 380
||||||||||||||||||
Sbjct: 18 tgaaggggaagccataat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_k19.g1 MSMg01no426_k19.g1 CHROMAT_FILE:
MSMg01no426_k19.g1 PHD_FILE: MSMg01no426_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:18 2005
(445 letters)
>mm_chr5_83226500_83227344
Length = 845
Score = 814 bits (421), Expect = 0.0
Identities = 439/445 (98%)
Strand = Plus / Plus
Query: 1 actgatgaaaatcgtccacatcacgagtactgaaaatgttaaagtttaattgctcagtga 60
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 actgatgaaaatcgtcaacatcacgaggactgaaaatgttaaagtttaattgctcagtga 260
Query: 61 aggaatatttgagagttgactctgattttgaaagccctgttatgaataaacactgttaag 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aggaatatttgagagttgactctgattttgaaagccctgctatgaataaacactgttaag 320
Query: 121 gttcttaggttggagtcagcactatcctaactcctgtacagtctgagttctcaaagacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gttcttaggttggagtcagcactatcctaactcctgtacagtctgagttctcagagacct 380
Query: 181 ctgtaagaatcaaataataatcttgaaagaaagcaagacaattgcttatgcaacatgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtaagaatcaaataataatcttgaaagaaagcaagacaattgcttatgcaacatgctt 440
Query: 241 tgtcctggaacaaaagccaggttcatagtcaggttcatactcctcttgatttttattcta 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tgtcctggaacaaaagccaggttcatagtcaggctcatactcctcttgatttttattcta 500
Query: 301 acagagatgatggctgtgttgcttccccattggcagaggtaccatttcagtctttcatga 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 acagagatgatggctgtgttgcttccccattggcagaggtatcatttcagtctttcatga 560
Query: 361 ttgatatatttaaaagaatagaagtaaaacaaaaaggaggggggcaggagagatggatgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgatatatttaaaagaatagaagtaaaacaaaaaggaggggggcaggagagatggatgc 620
Query: 421 ttggttaagaacactgactgctttt 445
|||||||||||||||||||||||||
Sbjct: 621 ttggttaagaacactgactgctttt 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
