BAC Information

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BAC

Clone NameMSMg01-426N09
Chromosome5 (Build37)
Map Location 40,771,648 - 40,771,959
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839, LOC100040502
Downstream geneLOC208522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426N09.T7 (MSMg01no426_n09.b1)MSMg01-426N09.TJ (MSMg01no426_n09.g1)
ACCAG520179AG520180
length811805
length of high quality
(start - end)		343 (67 - 409)330 (69 - 398)
definitionCHROMAT_FILE: MSMg01no426_n09.b1 PHD_FILE: MSMg01no426_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:31 2005CHROMAT_FILE: MSMg01no426_n09.g1 PHD_FILE: MSMg01no426_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
ACNTATTTCATGAATGGCAGACTACATTACTTATTAGTAGAAAGTCCTCC
CACACAATCACTTAAAATAAAAGCTGAGTCACTCTCATATACAGGAATTT
ACAATGGTTTAGGAAGTAGATCGGGCTGTGGTTTAAGGAGGAACTAGAGT
ATTGCATTATTCATGAGAAGGTTAGCTAGAGCAGAACTCCCTAATTAGAA
CCATGACTTGGGTATGAAAGCCCTTGCCCCAGGAGTGTAAAGACCTCACA
CCTGGCTTCTAAGAATATTTTTGACCTTAGATAGAGCTGACTTTTTCTAA
GTTGTTTTATTGCCCAGGTCCTGCCTGTCTTTATGTTTGCATTCCTCTGT
TTTGTGTAAGAGCCATTAAGCATCCAGTAATCTCATTGTACCTGGCTGAT
GTGTCACCCAACTTTCCTATTTTCTCTGTCTGATGCTCAATTTGAGAAAT
TACATTCAGATACACACTTTCTCTGTGGCCATGTCTGTCATCCATGCTGA
TTCCTTGTTCCGCTGCTACTGGAATCCTGAGTTTTTCCCATCGATCGAGG
ACCTGGTTGACGTTCTATCTGGTTTCATATACTGCTCTTTTATTCTTTGC
GCTAGGGCCCTTTTATTTTTATCCTCTTGGTGGAATACCACCGGTCTTAT
ATGGGTCTGGACGTTCCTCAATTTTTCTCTTTCTTTTTATCAACCCTTCT
CTCTTCTCGTGATCGCACACTTTTAAAGCTACTATTCTTCCCTCTTTTTC
CTCCTCCTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTTGAGTATCATTTATTTTGTCCCTATGA
TAATCACTCCATCAGCTGTTTCACTGTACAACCAATCTGTCCCAGAACTT
TCTGTAAGTGATGACAATTCATGGAATGACTTATACTGTATAATAAATTA
CATCACTATAATTCTCTCGATTAAAGACAGTGTTTGTGACTTTTATTCAT
TGGTTTAAACATCCTAAGAGCTGGCTCAATGGACCACAATGATGTCCATG
AGAACTTGAGTTTAGAAAGAAGAGAGAATCTCCGATTCATTCTATTTATT
TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTNNNTNN
NNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTT
TTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNNTTTTTTTTTT
TTTTTTTTTNNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTNTN
TTTTTTNTTTTTTTTTTTTTTNNTTTTNNNTTTTTTTTTTTNTTTTTTTT
TTTTTTTTNTTTTTTTTTTNTTTTTTTTTTTTTNNTTTTTTTTTNTTTTT
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_n09.g1 MSMg01no426_n09.g1 CHROMAT_FILE:
MSMg01no426_n09.g1 PHD_FILE: MSMg01no426_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:31 2005
         (330 letters)



>mm_chr5_40771495_40772224
          Length = 730

 Score =  561 bits (290), Expect = e-164
 Identities = 308/316 (97%), Gaps = 4/316 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctttgagtatcatttattttgtccctatgataatcactccatcagctgtttcactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctctttgagtatcatttattttgtccctatgataatcactccatcagctgtttcactgta 406

                                                                       
Query: 61  caaccaatctgtcccagaactttctgtaagtgatgacaattcatggaatgacttatactg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 405 aaaccaatctgtcccagaactttctgtaagtgatgacaattcatggaatgaattatactg 346

                                                                       
Query: 121 tataataaattacatcactataattctctcgattaaagacagtgtttgtgacttttattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tataataaattacatcactataattctctcgattaaagacagtgtttgtgacttttattc 286

                                                                       
Query: 181 attggtttaaacatcctaagagctggctcaatggaccacaatgatgtccatgagaacttg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 285 attggtttaaacatcctaagagctggctcaatggaccacaatgaagtccatgagaacttg 226

                                                                       
Query: 241 agtttagaaagaagagagaatctccgattcattctatttatttatttatttatttattta 300
           |||||||||||||||||||||||||    |||| ||||||||||||||||||||||||||
Sbjct: 225 agtttagaaagaagagagaatctcc----cattttatttatttatttatttatttattta 170

                           
Query: 301 tttatttatttattta 316
           ||||||||||||||||
Sbjct: 169 tttatttatttattta 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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