Query= MSMg01no427_l07.b1 MSMg01no427_l07.b1 CHROMAT_FILE:
MSMg01no427_l07.b1 PHD_FILE: MSMg01no427_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:39 2005
(456 letters)
>mm_chr5_21540455_21541310
Length = 856
Score = 789 bits (408), Expect = 0.0
Identities = 440/458 (96%), Gaps = 13/458 (2%)
Strand = Plus / Minus
Query: 1 catctttgagtgcctatgagtgaaaacacagacacattttttgacatgtgtagaggacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 catctttgagtgcctatgagtgaaaacacagacacattttttgacatgtgtagaggacat 392
Query: 61 tgttggagacatacagcaagccagacatcttaggagaatgtatataatagagtcttgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgttggagacatacagcaagccagacatcttaggagaatgtatataatagagtcttgtta 332
Query: 121 agcaccatacttctgggggaactaattgtttagtatatctgatcttggagatgagagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agcaccatacttctgggggaactaattgtttagtatatctgatcttggagatgagagttt 272
Query: 181 taaatagttcaatttattcaactacttccttgaaagtaatgtttgtagtataaatattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 taaatagttcaatttattcaactacttccttgaaagtaatgtttgtagtataaatattta 212
Query: 241 taatttaagac------tttttttgtgtctgaattttaacttgtttcccctttagaataa 294
||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 211 taatttaagacagcaag-------gtgtctgaattttaacttgtttccccattagaataa 159
Query: 295 tctccgtagagctaccggatgatgcaagacagtttggaatccagttcagacgccggcagc 354
|||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 158 tctctgtagagctaccggatgatgcaagacagtttggaatccagttcagatggtggcagc 99
Query: 355 cttaccattcttcccaaggagaagacgtgtgggccattgatgagattgtcatgacctcag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 cttaccattcttcccaaggagaagacgtgtgggccattgatgagattgtcatgacctcag 39
Query: 415 tcctgttcaacagcatcagtctcgactttaccaatctt 452
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 tcctgttcaacagcatcagtctcgactttaccaatctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_l07.g1 MSMg01no427_l07.g1 CHROMAT_FILE:
MSMg01no427_l07.g1 PHD_FILE: MSMg01no427_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:39 2005
(498 letters)
>mm_chr5_21343443_21344341
Length = 899
Score = 903 bits (467), Expect = 0.0
Identities = 491/499 (98%), Gaps = 1/499 (0%)
Strand = Plus / Plus
Query: 1 aataggcatttcatagacgaacagatagagttcgtctcctgacgccggagtctcacctga 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aataggcatttcatagacgaacagatagagttcgtctcctgacaccggagtctcacctga 260
Query: 61 atgattcctgaaagtaaggtaacagacatggcgactttcactcttagtgcatctctggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgattcctgaaagtaaggtaacagacatggcgactttcactcttagtgcatctctggct 320
Query: 121 tccgtcccgttggttgcatttactcctcctgggatgacaatatcatctggtactaaccgg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtcccgttggttgcatttactcctcctgggatgacaatatcatctggtactaaccgg 380
Query: 181 acggccacacctccaatcatcaagctaataacagcaaaaggacctgaaacagagatgtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acggccacacctccaatcatcaagctaataacagcaaaaggacctgaaacagagatgtag 440
Query: 241 gcatgaactctacccagaagctcaaggaatgaa-ccactagctcccatgtggtcaacagg 299
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gcatgaactctactcagaagctcaaggaatgaagccactagctcccatgtggtcaacagg 500
Query: 300 aatgatctgtgctcaggggcctataatttaattttagccaaaagaatggagcggcagaga 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 aatgatctgtgctcaggggcctataacttaattttagccaaaagaatggagcggcagaga 560
Query: 360 ccctgagtgacttctgagatctgcatgctcacagataagaaccggagaaaacaggagcgt 419
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 561 ccctgagtgacttctgagatctgcatgctcacagataagcaccggagataacaggagcgt 620
Query: 420 gaggcatgcaggcttgtctcttcaacagaagggatgtgtatacctgtttcctacccagaa 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggcgtgcaggcttgtctcttcaacagaagggatgtgtatacctgtttcctacccagaa 680
Query: 480 ggccaggtgtggatgttgt 498
|||||||||||||||||||
Sbjct: 681 ggccaggtgtggatgttgt 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space: 433832
Effective search space used: 433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
