BAC Information

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BAC

Clone NameMSMg01-427L15
Chromosome5 (Build37)
Map Location 138,647,152 - 138,647,613
singlet/doubletsinglet
Overlap geneGm454
Upstream geneAche, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925
Downstream geneBC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427L15.T7 (MSMg01no427_l15.b1)MSMg01-427L15.TJ (MSMg01no427_l15.g1)
ACCAG520857AG520858
length737744
length of high quality
(start - end)		493 (80 - 572)462 (86 - 547)
definitionCHROMAT_FILE: MSMg01no427_l15.b1 PHD_FILE: MSMg01no427_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:40 2005CHROMAT_FILE: MSMg01no427_l15.g1 PHD_FILE: MSMg01no427_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNNTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCCAAGGATTCAGAAGGAGCAATTTGCAAATTCA
TCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAA
AGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGC
AATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACC
AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC
TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCAT
TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC
GCATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC
AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT
GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAA
CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTCATG
AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCCATATTACAAAAGA
CCACCAACTGGTTGGGAAAGGATCTTACCTATCCCTAATCAGATAGGGGA
CTAATATCCCCCCTATATTAAGAACTGAAGAAAGTGN

NNAAAGGGCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGTAAATGTATG
CAATTGACATGGATACAGCTATGTCAAGGACCCCAATGCCTCAGACCATG
GGAAATTGGAAAAATCCTCCCTAAGCTAGTCTTAAGGAAATTGCAAAACC
ACCCCTCCTGGTCTGAGAGTGAATGTTGATAGAGATGACCACCAAGAACA
GCATCAGCTGTTCCTATGTCAGAGGGGCAGCAGGTGGCGGGTGCCATGGC
TTTCATTGGGTAGTCTGCTTCTGACATTAGGAGAAGGTTACAGTGTCTAG
AGAGTCTGCAAACATTATCTTTGCAAGATCTGGTTAAGGAGGCAGAGAAA
GTGTATGATAAGAGAGAGACTGAAGAAGAAAAAAGTAAAAGAGAAAAGAG
AGAGGCTGAGGAAAGAGAAAGTAGACGAGATAGAAGGCTGGAAAGAAATT
TAATTAGGATTTTGGCTACATTCACAGGTGATAAAGAAGCTTATAGAAAA
GGTGGAGAAAGTAGGCAGAGAGGAAGTAGGCAGACAGGGTACCTGGGCAA
CACAGGGCCGAGAAGACCTCAGAACTCTGGGAGACCTTCACAACCACCTC
TATAGATAAAGACCAATGTGCATACTATAAAGAAAAACGACCCTGGGCAA
GAGATCCCCCAAGAAAATGACGGACATCTGAAAGGCCAAAGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_l15.g1 MSMg01no427_l15.g1 CHROMAT_FILE:
MSMg01no427_l15.g1 PHD_FILE: MSMg01no427_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:40 2005
         (462 letters)



>mm_chr5_138646952_138647813
          Length = 862

 Score =  721 bits (373), Expect = 0.0
 Identities = 442/465 (95%), Gaps = 6/465 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagtaaatgtatgcaattgacatggatacagctatgtcaaggaccccaatgcctcaga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ctgagtaaatgtatgcaattgacatggatacagctgtgtcaaggaccccaatgcctcaga 260

                                                                       
Query: 61  ccatgggaaattggaaaaatcc-tccctaagctagtcttaaggaaattgcaaaaccaccc 119
           ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||  |||
Sbjct: 261 ccatgggaatttggaaaaa-ccatccctaagctagtcttaaggaaattgcaaaacttccc 319

                                                                       
Query: 120 ctcctggtctgagagtgaatgttgatagagatgaccaccaagaacagcatcagctgttcc 179
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 320 ctcctggtctgagagtgaatgttgatagagatgaccaccaagaatagcatcagctgttcc 379

                                                                       
Query: 180 tatgtcagaggggcagcaggtggcgggtgccatggctttcattgggtagtctgcttctga 239
           |||||||||||| ||||||||||| | ||||||||||| ||||||| |||||||||||||
Sbjct: 380 tatgtcagagggccagcaggtggcagttgccatggcttccattgggcagtctgcttctga 439

                                                                       
Query: 240 cattaggagaaggttacagtgtctagagagtctgcaaacattatctttgcaagatctggt 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 cattaggagaaggttacagtgtctagagtgtctgcaaacattatctttgcaagatctggt 499

                                                                       
Query: 300 taaggaggcagagaaagtgtatgataagagagagactgaagaagaaa-aaagtaaaagag 358
            || |||||||||||||||||  |||||||||||||||||||| ||| |||| |||||||
Sbjct: 500 aaaagaggcagagaaagtgtaccataagagagagactgaagaa-aaataaagaaaaagag 558

                                                                       
Query: 359 aaaagagagaggctgaggaaagagaaagtagacgagatagaaggctggaaagaaatttaa 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 559 aaaagagagaggctgaggaaagagaaagtagacgagatagaaggctggaaagaactttaa 618

                                                        
Query: 419 ttaggattttggctacattcacaggtgataaagaagct-tataga 462
           |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 619 ttaggattttggctacattcacaggtgataaagaag-tgtataga 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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