BAC Information

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BAC

Clone NameMSMg01-427L16
Chromosome5 (Build37)
Map Location 137,567,770 - 137,568,167
singlet/doubletsinglet
Overlap genenone
Upstream geneRasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1
Downstream geneTrim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427L16.T7 (MSMg01no427_l16.b1)MSMg01-427L16.TJ (MSMg01no427_l16.g1)
ACCAG520859AG520860
length734749
length of high quality
(start - end)		541 (55 - 595)516 (92 - 607)
definitionCHROMAT_FILE: MSMg01no427_l16.b1 PHD_FILE: MSMg01no427_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:40 2005CHROMAT_FILE: MSMg01no427_l16.g1 PHD_FILE: MSMg01no427_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGATGATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTAAGGCTCTACCTCAAAAGCAACAACACCAGGAACG
GGAGGGGTATCTCAGAGATCAAGGGCTTGGCTGCTCTTCCAGGGGACCTG
CATTTGAGTCGCAACATCCACGTGGAAGCTTACAACTGTCTGTAACTGTA
GGCCCAGGGGATCCGGTGTCCTCTTCTGTAGGCATGGCACACACATAGAA
CATCTACACACCTAAAAATTAAATTAAATTAAAATTTAAAACAACATCAA
TAAACAAATACATGTGGTATCTGCACTTGGGAATCTGAGGCAGGAGGATT
GTGAGTTCAAGGCCATTCTTCAACACAAGGGAGACCCTGCCTTGAAATGT
ATCATTTTGTACACGGCACATACACTTAATAATGAATAAATCTTAAACAT
TTTTTTTACAGCAGGGTTCAGACTGAGAAGGAAAAGCCCATGTTTTCTGA
ACCCCGAAGCCTGCTTCAGCTGGTTTCTCCAGTCCACTGGGGATCCCTCT
GAAGGAGCTGGGCCTCGCACTTCCTGAGACAGCCAGTTCCTTTCAGGACA
TTAGCTGTTGCAGGCTGAGGGTTTTGCCTGCAGGAGCTGAGCTGCAGCTG
ACCTGGGCACACCCGGGGCTGTCTGGATCTGGGGGCAGATACAAGGGCAC
AGGGAGCTGGCAGGCCAGCCTGTCCCCTGGGAGT

NNTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATGGTC
ACAGAGCTGGGAAGATCATTGTGAACCTCACAGGAAGGTTGAACAAGTGT
GGCATTGTAAGCCTTAGATTTGATGTGAAAGAAGAAAGACCTAGAGAAAT
GGCAGAACAACCTGCTCCCATCACGGCAGTTTGACTTCATTGTGCTGACA
ACCTTGGCTGGCATCATGGACCATGAAGAGGCAAGACAAAAACATACAGG
AGGGAAAATCCTGAGATTCTTTTTTTTTTTAATGTAAAGCATAAATAAAA
AGCCTTTGTGGACTTTGGGGGGAAAAAAGATATTCAAAACCACCTGTAAC
TCTAGCTCCTAGGGATCTAAGGTCCTCTTGTGATTTCACATGAATTCACA
CTCACAGGAACAGACACAGACACAAGCACACACAGATACATAAATAAAAA
TAAACACACAAGGAGAAAAGAAATGAAACATTGAAGTAGTAGCGTGATAT
ATTAACTGCTACACCCTGAGTAACTGCTACACCCTGAGGCAGGGAGATCA
TGAGTTCAAAGCCAGCCAGGGTTATTTCCAGTGACCATGTCTCAGAAGCC
AAAACAATCCTGGAGAGACAGATCATTCTTGTAAATGAGATACCCCGAAA
TACCCCTAGATATCAATGATCCCAAATAGATTTTTTTAAAATTCATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_l16.b1 MSMg01no427_l16.b1 CHROMAT_FILE:
MSMg01no427_l16.b1 PHD_FILE: MSMg01no427_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:40 2005
         (541 letters)



>mm_chr5_137567227_137568167
          Length = 941

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Minus

                                                                       
Query: 144 gtaggcccaggggatccggtgtcctcttctgtaggcatggcacacacatagaacatctac 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 gtaggcccaggggatccggtgtcctcttctgtaggcatggcacacacatagaacatctac 882

                                                                       
Query: 204 acacctaaaaattaaattaaattaaaatttaaaacaacatcaataaacaaatacatgtgg 263
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 881 acacctaaaaattaaattaaattaaaatttaaaacaacagcaataaacaaatacatgtgg 822

                                                                       
Query: 264 tatctgcacttgggaatctgaggcaggaggattgtgagttcaaggccattcttcaacaca 323
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tatctgcacttgggaagctgaggcaggaggattgtgagttcaaggccattcttcaacaca 762

                                                                       
Query: 324 agggagaccctgccttgaaatgtatcattttgtacacggcacatacacttaataatgaat 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agggagaccctgccttgaaatgtatcattttgtacacggcacatacacttaataatgaat 702

                                                                       
Query: 384 aaatcttaaacattttttttacagcagggttcagactgagaaggaaaagcccatgttttc 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aaatcttaaacattttttttacagcagggttcagactgagaaggaaaagcccatgttttc 642

                                                                       
Query: 444 tgaaccccgaagcctgcttcagctggtttctccagtccactggggatccctctgaaggag 503
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgaaccccgaagcctgcttcggctggtttctccagtccactggggatccctctgaaggag 582

                                                 
Query: 504 ctgggcctcgcacttcctgagacagccagttcctttca 541
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctgggcctcgcacttcctgagacagccagttcctttca 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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