BAC Information

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BAC

Clone NameMSMg01-428F08
Chromosome5 (Build37)
Map Location 74,319,523 - 74,320,027
singlet/doubletsinglet
Overlap genenone
Upstream geneSlain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428F08.T7 (MSMg01no428_f08.b1)MSMg01-428F08.TJ (MSMg01no428_f08.g1)
ACCAG521323AG521324
length753773
length of high quality
(start - end)
510 (77 - 586)295 (85 - 379)
definitionCHROMAT_FILE: MSMg01no428_f08.b1 PHD_FILE: MSMg01no428_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:29 2005CHROMAT_FILE: MSMg01no428_f08.g1 PHD_FILE: MSMg01no428_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAAGATTGCAAGATCTACACGTCTAATGTCACATTCTTCTT
CATAATGTCTGTGTTAGGCATCTCTTCTTATCTTCTGAAGCTTATTTTTT
AAATTCCCCGACTACAGCCATAGAAGGTTATTTTGGATGTAATTCCCCAA
ACTTCGTTAGAGGACAACCAGCAAGGGGCAGGGAAGAGGGAGGAGCAAGA
GATCCATTTGGAAATATGGAGTCGCGGCTCCATCCAACCCAGAGGTACTA
AATCATGATCTCTGGAAATGGGTTTGGTGATGTAGATACATTTGGCAAGC
ATATCTAGGCAGCACCACTGAGGGTTCCTTGTTCCCTGTTCAGTTTCAAC
GTCTACTAAAACCCAAGAAGAGCACCTTACAACAGAAGCCCCTAAGCAAG
CACAGCTTTGGACCCATAACTGAGGATGTAACTGTTCCGAAGTGTGTTTT
CTGAGCACAAAATTCATCTGGAGATCTTGTGAAAATGCAGGTGGGATTTG
GTGTGTCTTGTGTAGATTCTGAAGTCCTGACGAGCTCTGGAGTTGCTGAT
GCAGCAGACCCATAAGTCACTCTTCCTAGGGGCAGAGCCCTTGGACGAAT
TCTAAGTTTCCTATTTGCCCCATAGCCGAGCGGTTTGATCTCTGCCTACT
TTGAAATGCTTTGGTACCGGCCTTATTACTCACCCCGCCCCCGTATTTAC
TAT
NNNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCTGCTGGCAAGAG
GAACTGGTGGAAGAAATGGGATCGGCATTGAGTTTTTTTTTTTTTTTTTT
TTTTTTTTGCTTTTGCTTTGTTTTGAAGCAAGGTCCCTGGTAGCACAGGC
TGCTCTGAAAAATGGAAGATGACTTTGATTTCCAGCCCCCACTGCTGTGT
CCATCAGGTCTCATGAGGGTTACAGGCACGTGCACGTGGATTGAGACAAA
TTTTCATCAAGAACAGCAGAGTGGCCTGGAACTCTCCATTCTTCCTATTC
AGTCTTCATAACTTCTGTTTGACACCAAGCCCAGCTCCAGCTAAACCGCA
TAGAGCAGCTATAGGGTATAATGAATATCCACTAAAGGTCAGCTACTATT
ATCTAACAGACACGCCTGAACATATGCTGGGCATGTCATGTAAATACCAA
TGCTTTATTGATCTGCATTCATATTAGTTAAGGGCATTTTGTTTGTTGGT
TTGAACCAAAACCTCAGTATGTTACCCTGGCTGGCCTGAACTAAAATCAC
GCCTAAACCTAATACCTTCAACCCTTTAGGGGGGGGGATAATTGAAAGGG
GGTCTTCCCCAGTCCCCTTATTTTTTCGGAAAATTTTAAAAAACCCCCCT
CCGCCCAAACCCCGGCTCGCTACCTTTTATATCCCCNCGGCATTTTCTCT
GTGGCCGTATTTAAAATCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_f08.b1 MSMg01no428_f08.b1 CHROMAT_FILE:
MSMg01no428_f08.b1 PHD_FILE: MSMg01no428_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:29 2005
         (510 letters)



>mm_chr5_74319323_74320232
          Length = 910

 Score =  924 bits (478), Expect = 0.0
 Identities = 499/506 (98%), Gaps = 2/506 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgtctaatgtcacattcttcttcataatgtctgtgttaggcatctcttcttatcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgtctaatgtcacattcttcttcataatgtctgtgttaggcatctcttcttatcttct 260

                                                                       
Query: 61  gaagcttattttttaaattccccgactacagccatagaaggttattttggatgtaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagcttattttttaaattccccgactacagccatagaaggttattttggatgtaattcc 320

                                                                       
Query: 121 ccaaacttcgttagaggacaaccagcaaggggcagggaagagggaggagcaagagatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaacttcgttagaggacaaccagcaaggggcagggaagagggaggagcaagagatcca 380

                                                                       
Query: 181 tttggaaatatggagtcgcggctccatccaacccagaggtactaaatcatgatctctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggaaatatggagtcgcggctccatccaacccagaggtactaaatcatgatctctgga 440

                                                                       
Query: 241 aatgggtttggtgatgtagatacatttggcaagcatatctaggcagcaccactgagggtt 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgggggtggtgatgtagatacatttggcaagcatatctaggcagcaccactgagggtt 500

                                                                       
Query: 301 ccttgttccctgttcagtttcaacgtctactaaaacccaagaagagcacc-ttacaacag 359
           |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 501 ccttgttccctgttcagtttcaacgtctactaaaacccaagaagag-acccttaaaacag 559

                                                                       
Query: 360 aagcccctaagcaagcacagctttggacccataactgaggatgtaactgttccgaagtgt 419
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 560 aagcccctaagcaagcacagctttggacccataactgaggttgtaactgttccgaagtgt 619

                                                                       
Query: 420 gttttctgagcacaaaattcatctggagatcttgtgaaaatgcaggtgggatttggtgtg 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gttttctgagcacaaaattcacctggagatcttgtgaaaatgcaggtgggatttggtgtg 679

                                     
Query: 480 tcttgtgtagattctgaagtcctgac 505
           ||||||||||||||||||||||||||
Sbjct: 680 tcttgtgtagattctgaagtcctgac 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)