Query= MSMg01no428_l04.b1 MSMg01no428_l04.b1 CHROMAT_FILE:
MSMg01no428_l04.b1 PHD_FILE: MSMg01no428_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:57 2005
(552 letters)
>mm_chr5_92696498_92697450
Length = 953
Score = 762 bits (394), Expect = 0.0
Identities = 424/434 (97%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 120 aaaaaaaatccaggaggctaggtatggtggcatacagtttaatcccagcactcagaagag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 aaaaaaaatccaggaggctaggtatggtggcatacagtttaatcccagcactcagaagag 890
Query: 180 gcagaggtaagcagatctctgtgagtttgaggccagctttgcctacatagcaagttccag 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 889 gcagaggtaagcagatctctgtgagttcgaggccagctttgcctacatagcaagttccag 830
Query: 240 gccacccagcctacatagtaaaaccctgtctcaatttctattaactaactaactcactca 299
|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 829 gccacccagcctacatagtaaaactctgtctcaacaactaacaactaactaactcactca 770
Query: 300 ttcactaactaacaaaaactgcaggagagtgtagggaaattaagtgatttcagcatatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ttcactaactaacaaaaactgcaggagagtgtagggaaattaagtgatttcagcatatat 710
Query: 360 tttgttggatggtaaagtaatgc-ctttttttttttccccaattccagattgcattcact 418
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 709 tttgttggatggtaaagtaatgcttttttttttttttcccaattccagattgcattcact 650
Query: 419 gggaccacttttgttggctatgtaggactgtggacaggccaaagtccacacaagtttaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gggaccacttttgttggctatgtaggactgtggacaggccaaagtccacacaagtttaca 590
Query: 479 atttctggtgatgaacgaggtaattaaaacaaactcttgaacattttaaatggaatccct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atttctggtgatgaacgaggtaattaaaacaaactcttgaacattttaaatggaatccct 530
Query: 539 gttgaggttttctg 552
||||||||||||||
Sbjct: 529 gttgaggttttctg 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space: 511106
Effective search space used: 511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_l04.g1 MSMg01no428_l04.g1 CHROMAT_FILE:
MSMg01no428_l04.g1 PHD_FILE: MSMg01no428_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:57 2005
(537 letters)
>mm_chr5_92456385_92457330
Length = 946
Score = 890 bits (460), Expect = 0.0
Identities = 486/500 (97%), Gaps = 11/500 (2%)
Strand = Plus / Plus
Query: 48 gaaagaaaacaaattaaaactttggcaactgattttatgaccttagaaattatttgctga 107
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaaagaaaac-aattaaaactttggcaactgattttatgaccttagaaattatttgctga 306
Query: 108 ttaaaatttagataaccaaatgccagttgaagt-----gtgcacacctgtaactctagtc 162
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 307 ttaaaatttagataaccaaatgccagttgaagtgtggggtgcacacctgtaactccagtc 366
Query: 163 tgcaacacccagaggcaggagcactgaggcaagctggaggcaacctgggcagcatagtgt 222
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 367 tgcaacacccagaggcaggagcactgaggcaagctggaggcagcctgggcagcatagtgt 426
Query: 223 catcttgtcccaacagcaacaaaagatcacacactgtaaattcctgagagcataaaagag 282
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 427 catcttgtcccaacagcaacaaaagagcacacactgtaaattcctgagagcataaaagag 486
Query: 283 ccctctctgtcactgccaccatgccaggtgcttcacacagatgacttcattaaacaaggt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccctctctgtcactgccaccatgccaggtgcttcacacagatgacttcattaaacaaggt 546
Query: 343 cttgctctcatccactgaaatccctcaacaccaataaaaacagaacagattctgtaaata 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cttgctctcatccactgaaatccctcaacaccaataaaaacagaacagattctgtaaata 606
Query: 403 cttttaagttctacagttgattctgaaacttttactatataattcgcttcaaggcactca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttttaagttctacagttgattctgaaacttttactatataattcgcttcaaggcactca 666
Query: 463 aaaa-----aaaaggagaaggtagtgtgaagttaaacaagattgctatccaagagctggt 517
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaaacaaaaaaaaggagaaggtagtgtgaagttaaacaagattgctatccaagagctggt 726
Query: 518 cacaggtaaagctagatcca 537
||||||||||||||||||||
Sbjct: 727 cacaggtaaagctagatcca 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 946
Length adjustment: 10
Effective length of query: 527
Effective length of database: 936
Effective search space: 493272
Effective search space used: 493272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
