BAC Information

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BAC

Clone NameMSMg01-428L19
Chromosome5 (Build37)
Map Location 38,492,699 - 38,492,947
singlet/doubletsinglet
Overlap geneStx18
Upstream geneJakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
Downstream geneNsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428L19.T7 (MSMg01no428_l19.b1)MSMg01-428L19.TJ (MSMg01no428_l19.g1)
ACCAG521633AG521634
length763793
length of high quality
(start - end)
249 (68 - 316)---
definitionCHROMAT_FILE: MSMg01no428_l19.b1 PHD_FILE: MSMg01no428_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:00 2005CHROMAT_FILE: MSMg01no428_l19.g1 PHD_FILE: MSMg01no428_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGAACCTCTTGCTTGACCTCTCAAGTGCTGGGGTTATAGGTGTGTGTC
ACCATGGCCAGTGAGGCTAGAGAGTTTAGACTAAGGTGTGTACATGTGTG
TGCATGCGTGTGTATTGTGGATGGGGACGGAGGAATCTACAAACTGATTC
TTGAGAGGAAGGCATGGCTGAAGGCAGCAAGAATAACAATGGAAGCAGGT
AACAGTGGAAGGAGAAGAGAAAGGTGAAGACTTCAAACTGGCTGGAGCAC
AGGACAGTAGGAATGCTGTTTTTTGTGACTACCAGAGCTGATCAGGGACT
CTGCAGCCAATGGAAAGGCTAAGTGTCATAAAGGGGAGATGAGGTGGCAT
GTCACATGGAACGGTGGCAGAAACTCGGGCCTGGGGCTACTGACCTTGAG
CTAAGAAGCCTGCCTTATTCATCTCCACATTCATTTGTCTGCATCATTTG
TTTGATTGATTGTTACCACCTCTCCCCACAGTTAATGCTGGTACTGAACC
CACGCAGGTTTGTCTTTGTCGTATTACTCGTGTTTATCACCGACCTACGT
GCATGCCCAGCCCTTTCTCACCTCTTTGTTTCTTGCCCCTTCTTTTCCCC
CATTTTTTGTTCTTTTTCCTCATTTTTCTCCTTTGCATTACCCATCTCTT
CTTCTCCTCACCACCCCTCTTTTTTTTCCCCTTTTCCTCCTGTTTCCACT
TTTTATTCCCCTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACCAGTGGAGGAAGACTGATTTGAATTCAAG
AAGCTGAGTTCTAGGCCCTAGGGCTATCTCTGACTGGGAGTGTTGCTCTC
GGCTCGANNACCTCACACCCCTTGGGCCATTTGCTGGCGCAAANACTGCC
ACNTCTCCTCACAAAAAANACNNNTNNNNNCAGNCTCCAAACCGGGNNCC
NNCGCCGCCACACCCTTCAATAACCGTGCGCGGGGGGGGGGGGTGGGGGG
GGGGGCCGGGAGACCCCGGGAGGGCCTGGGGGGGGTGGGGGGGAAAAATC
CCTCCCCCCCAATACCAAAAGGCCCCCCCAAAAAACCCCCCCCCCTAAAT
TNNNCCCTCCCCCCCCCCAGGGGAAAAAAAAAAAAAAAAAACTCTTTTTT
TTCCAAGGGAAATTTTTTTTTTTCTTTATGTAAAACCCCCCCTGCGCCTT
TCTCCCCCTCAAACCGGTCCCCCCCCCCCCCCCCCCCCCCCCCGTTTCCT
CCCCCCCCCCCCCACAATATTTTTTTTTTGCCCTNTTTTCCCCCCCTCCC
ATNTTTTCTTTNTTTTTTCCTTCTTCCCCTTTCTCTTTTTTTTCCCTCCT
TTCTTTTTCTCCCTTTCCCCCTTCCCCCTNNANNCTTTCNTTCTTTTTCC
TTTTTNTTTTTCTTCTCTCTCTTTTTTTNNCTCTTNCCCCCCTTCTNCCT
CCCCTTTTCTTTCTCCTCCCCTCCCTCATACCCCCCACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_l19.b1 MSMg01no428_l19.b1 CHROMAT_FILE:
MSMg01no428_l19.b1 PHD_FILE: MSMg01no428_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:00 2005
         (249 letters)



>mm_chr5_38492454_38493102
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctctcaagtgctggggttataggtgtgtgtcaccatggccagtgaggctagagagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acctctcaagtgctggggttataggtgtgtgtcaccatggccagtgaggctagagagttt 435

                                                                       
Query: 61  agactaaggtgtgtacatgtgtgtgcatgcgtgtgtattgtggatggggacggaggaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agactaaggtgtgtacatgtgtgtgcatgcgtgtgtattgtggatggggacggaggaatc 375

                                                                       
Query: 121 tacaaactgattcttgagaggaaggcatggctgaaggcagcaagaataacaatggaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tacaaactgattcttgagaggaaggcatggctgaaggcagcaagaataacaatggaagca 315

                                                                       
Query: 181 ggtaacagtggaaggagaagagaaaggtgaagacttcaaactggctggagcacaggacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggtaacagtggaaggagaagagaaaggtgaagacttcaaactggctggagcacaggacag 255

                    
Query: 241 taggaatgc 249
           |||||||||
Sbjct: 254 taggaatgc 246


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)