BAC Information

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BAC

Clone NameMSMg01-428P15
Chromosome5 (Build37)
Map Location 82,504,853 - 82,505,120
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428P15.T7 (MSMg01no428_p15.b1)MSMg01-428P15.TJ (MSMg01no428_p15.g1)
ACCAG521816AG521817
length751757
length of high quality
(start - end)
489 (75 - 563)362 (98 - 459)
definitionCHROMAT_FILE: MSMg01no428_p15.b1 PHD_FILE: MSMg01no428_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:19 2005CHROMAT_FILE: MSMg01no428_p15.g1 PHD_FILE: MSMg01no428_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGCACCCCACTTTTTAATGGGGTTATTTGAATT
TCTGAAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCC
TATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCTT
TTTGTCTTATTGACAGTGTCTTTTGCCTTTCAGAAGCTTTGCAATTTTAT
GAGGTTTCATTTGTTGATTCTAGATCTTACAGCATAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCTTCTGTGTCCATATCTTTGAGGCTTTTCCCCACT
TTCTCCTCTATTAATTTTAGTGTCTCTGGTTTTATGTGGAGGTCTTTGAT
CCACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATAGATCAATTCACA
CTCTTCTACATGATAACTGCCAGTTGTGTCAGCACCATTTGTTGAAAATG
CTGCCTTTTTTTCCACTGGGTGATTTTAGCTCCCAAACATCAAGTGACCA
TAGGTGTGTGGGTTCGTTCGTGGTTTTTCAATTCTATTCCATTGATCTAC
CTGTCTGTCTCCGCACCAGTATGATGCAGCTTTTTTCATCAATTGTTCTG
TTTTTTTTCTTTATGTCCCGTTTGTTGAAACCCCCAGAGTTTCTTTTTAT
TTTCGATAATTTTTTTCGCCATTCCCCCTTTTTCCTTCTTTTTTCCCCAG
T
TATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATAAGTCAATGTANAATAAAAATT
TGAAACAAATAGTTCAATTTTAACAACTAAAGGTACATCTAGATCTTTTT
TTTTTCTTTCCATTTTTTATTAGGTATTTAGCTAGATCTTATCCCCTAAA
TATTTCAATTAGCTTACAGAAGAACTGTAATATAATCTAAAACATAATGC
TTTACTTCTTAAATGGGAAGCCATAGGACTAGAGTTTTCTAAACGCTAAT
AAATCTGGCTTGTAAAATATGATAAGGACACAGTTATTTGGGAGGTAAGG
ATTAAATACAGTTAAATGGTTCTTCCCAGCAGGGTTTCTGGAAATAGTAT
GAATGGAGGCTTGTAGAAACACATTTGTGGATAGAAAGCCAGAATAAATT
GAGAAGAGCAGAGCTAACAAGATGAAGAATTTACCAGAACAGAAATTAAT
AGAGACTGCATTACATTTTTGCTTTAATGATGATTATGGTGACGAATGTG
ATGATGATAGTGATACCGCCGCCTACTTTTTTCTACTTATTTCTTCCGCC
CTTTTTTTCTCTCTCTCCCCACCTTCTTTTTCTCTTTCGCCTATCGCCCC
TTGTTCTTTCTCTTCGCTTTATCCTTTTTCTCTTCCTCTTTCTTCCTCCT
CCCCCCCTTTTTTCCCCCTTTTTTTTTTCCTCTCCCTTTTTTTTTTTCTT
TCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_p15.g1 MSMg01no428_p15.g1 CHROMAT_FILE:
MSMg01no428_p15.g1 PHD_FILE: MSMg01no428_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:19 2005
         (362 letters)



>mm_chr5_82504569_82505330
          Length = 762

 Score =  480 bits (248), Expect = e-140
 Identities = 263/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 85  ctagatcttatcccctaaatatttcaattagcttacagaagaactgtaatataatctaaa 144
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctagattttatcccctaaatatttcaattagcttacagaagaactgtaatataatctaaa 344

                                                                       
Query: 145 acataatgctttacttcttaaatgggaagccataggactagagttttctaaacgctaata 204
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atataatgctttacttcttaaatgggaagccataggactagagttttctaaacgctaata 404

                                                                       
Query: 205 aatctggcttgtaaaatatgataaggacacagttatttgggaggtaaggattaaatacag 264
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 405 aatctggcttgtaaaatatgataaggactcagttatttgggaggtaaggattaaatacag 464

                                                                       
Query: 265 ttaaatggttcttcccagcagggtttctggaaatagtatgaatggaggcttgtagaaaca 324
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 465 ttaaatggttcttcccagcagggtttctggaaatagaatgaatggaggcttgtaaaaaca 524

                                       
Query: 325 catttgtggatagaaagccagaataaat 352
           ||||||||||||||||||||||||||||
Sbjct: 525 catttgtggatagaaagccagaataaat 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)