BAC Information

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BAC

Clone NameMSMg01-429C11
Chromosome5 (Build37)
Map Location 146,005,768 - 146,005,998
singlet/doubletsinglet
Overlap geneZfp655
Upstream geneBri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116
Downstream geneLOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429C11.T7 (MSMg01no429_c11.b1)MSMg01-429C11.TJ (MSMg01no429_c11.g1)
ACCAG521950AG521951
length722725
length of high quality
(start - end)
230 (311 - 540)69 (170 - 238)
definitionCHROMAT_FILE: MSMg01no429_c11.b1 PHD_FILE: MSMg01no429_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:32 2005CHROMAT_FILE: MSMg01no429_c11.g1 PHD_FILE: MSMg01no429_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCGAGCACCACCGCGGAATTCCACAG
TACAACACCGCATGAATGTAATGAGTGTGGGAAATCTTTCAGCCAAACCT
CATGCCTTATTCAGCATCACAAAATGCACAGGAAAGAGAAATCATACGAA
TACAACGGGTATGAGGAAAGTTTCAGTCACAGTTCTGATCTTACTCTGCA
ACAAGAAGTTCCCATTAGAGAGAGAGTCTTTGATTGTGATGCATGGGAAG
AGAACTTCAGTCAGAGAGCACACCTCATCCAACATGAAAGGGTCCATACC
AAATATTTTTTTTATGAATGCAGTGAACTTGGGGAGACATTTAGTCAAGT
ACAGGCCTCATTCAATATGTGAGAACTGAGACCAGGGAAAGTCACATGTA
CTGAATGCTATGATGTCTTCAGTCATAGCTTATTCCGTGGTCGGCATCAG
AGAATTGATAACCAGAGAGAAACCCGCTGAATGTGATGAACATTGGGAAG
GTTTTTTATTTTTTCTTATTTTTGGTGTTAAATTCTTCATTGGTTCCTGT
ACATCAGTGCTAGAATATATAGAATATGATACATTCTTCAGATTATTTTC
CTACCTTAGTCACAGTTGGGGAATTTGTACTGGAGTACAATTCCACTGTC
CAATGTGAAAAAGCCATCAGTCCACTACCTTGCTGGTTCAGTGTCAAATT
TGTGCCATGCACAAAGCCTGTG
TGTGAGAGGGCTGGNGGNCGCCTGGGTGCAAAAACCGGGGNGAACTANAG
AAGTACCAGAAAAACTCCTAGGGCCACCCACCTTCCCAGCATATAAGTAC
TTCAGGCTCAGCCCAGTAGGCAGAAAGGAAGCCCTACAGAGAGTCTCACA
CACACACACACAGGGGGGGATCTGGAGGGAGAACACTGAGGAGTAAAATT
GCAGACAGACAAGCAGAGATGAACCTATTTTCAGCGCTCTCACTGGATAC
ATTGGTCCTCCTGGCAATCATCCTGGTGCTCCTCTACCGGAGAGAGATCT
TCCCAGTTCTTTTTTAGACCATGGCCTCAGGATAGGGGAGATACTCAGAC
CTCTACTCTGCTATTATCAGGAAGAGGAGAATGGTTACCAGAAGCAGGGG
CTGGAGAGATGATGGCTCAGTGTTTAAGGGCACTGACTGTCCATTCAGAG
GACATAGGTCTGAACCCCAACATCCCCATGGAGGTCAGAATCATCTGTAA
CTATAGCTCCCGGGGATCTGACAACTTCCACATTCATAGCTAGCATGGTA
TTCAAGGGTGGTAGCTTTTGCAACCTGGCTAGCTCCTACATAATTGAGAC
CGAGACCTACCTCGTTCATTAGCAAGCTTTAATTGTTTTTGTTCGGTCCC
ATTCTAAGCTATTCTAACCCCCCCAGTTTTCATTCTCCCTTGGCACAAGG
ATCCCTTTTTCTTGGCCCCGTAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_c11.b1 MSMg01no429_c11.b1 CHROMAT_FILE:
MSMg01no429_c11.b1 PHD_FILE: MSMg01no429_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:32 2005
         (230 letters)



>mm_chr5_146005567_146006198
          Length = 632

 Score =  427 bits (221), Expect = e-124
 Identities = 228/231 (98%), Gaps = 2/231 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttatgaatgcagtgaacttggggagacatttagtcaagtacaggcctcattcaatatgtg 61
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 202 ttatgaatgcagtgaacttggggagacatttagtcaagttcaggcctcattcaatatgtg 261

                                                                       
Query: 62  agaactgagaccagggaaagtcacat--gtactgaatgctatgatgtcttcagtcatagc 119
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 262 agaactgagaccagggaaagtcacatatgtactgaatgctatgatgtcttcagtcatagc 321

                                                                       
Query: 120 ttattccgtggtcggcatcagagaattgataaccagagagaaacccgctgaatgtgatga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttattccgtggtcggcatcagagaattgataaccagagagaaacccgctgaatgtgatga 381

                                                              
Query: 180 acattgggaaggttttttattttttcttatttttggtgttaaattcttcat 230
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acattgggaaggttttttattttttcttatttttggtgttaaattcttcat 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 632
Length adjustment: 9
Effective length of query: 221
Effective length of database: 623
Effective search space:   137683
Effective search space used:   137683
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)