BAC Information

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BAC

Clone NameMSMg01-429C13
Chromosome5 (Build37)
Map Location 132,902,356 - 132,902,497
singlet/doubletsinglet
Overlap geneAuts2
Upstream gene4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429C13.T7 (MSMg01no429_c13.b1)MSMg01-429C13.TJ (MSMg01no429_c13.g1)
ACCAG521954AG521955
length731725
length of high quality
(start - end)
319 (313 - 631)145 (163 - 307)
definitionCHROMAT_FILE: MSMg01no429_c13.b1 PHD_FILE: MSMg01no429_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:33 2005CHROMAT_FILE: MSMg01no429_c13.g1 PHD_FILE: MSMg01no429_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTAAACGACTCCTATTCCCACACATCCGCGGAATTCTCCATG
TCCATTATTCTGAGAATGAGTTCTAATCACTCCCACACATGCACACTTAG
GACAGGGACAAGTTCAGCAATGCTGACAATGCTCCAGCTAGCAGCTCTGA
AGATAAGGACACAACATAATCCTGTGTTGAACCAAGATCATCATCTGCCA
TCAGAGTCCAATCAAACCAACACCACATTCTCCCCTCGCTGTGCTTAGAC
ACTTTACCTACTTCCACCAGAGCTATATCACAAGACAGAACTTATAGATA
AAATATTTTCTATACACAAACCTACATACACGGTAAATCCCAAAGTGCAA
GAGATCATCCAGTCAGCGGCCGAGAAGGTGGCTCGGCGAGTAAAGGGACT
GAGCTGTAAGCACAAGGACCTGAGCTTGAGCCCCACAACCCACATAAAAT
GCTACGCATGCCTGTAATCCCAGAGTGGGCGAGGAAGACACAGGAGGGTC
TCCTAGATTTTCTAAGCATTCAACCTGAGTAAGTTCCAAACCAGTAAGTA
AGCATGTCGCTAAATGAGCTGGATAGCACTGGAGTCGTCTCAGGGATGGT
TGGAGTCTGGCCTCCACATGAACATGTTCACACATACACACCCACACACA
CACACTTGTACCACACAGAGAAAGCAGAGCGTAGCTGGCACTCACTCACT
CCCTTCTGAGACCCCCCGGTGTACTTGTGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATAAAACCTTAGGAGAAACCTTGGCAAAAGCTAGG
CTTTTCTGTCTGTGCTGTTTAACAGAGACAAGTCAGAAACTGACTTGGTA
GCAGGATGCTGCAAATGTGTTACTGTGTAAGTAGTGGACTGTTGAACCTC
ATGCTCCAGTATACTGGCTTCAGAGAAGGGGCAGCTCATTACACGCTAAT
GGGAGTTTAGTGAAATGGATGAGTGATCTTAGACTTGATTCTTAAGCTGT
GACATATTTTTTTTCAAGTAGCCTAGGAGATCTGGGAGTCACCTGCCGAG
ACCAGACACTTGTAACTCTGAGGTGGTAAGGGGGACACAGGTGGAATCAG
TCTCTGGAGGCAGTGTGCATAGATTGAATTTAGCAAACAAGAGTGTACCA
AGTGCATTGCTTAGTATAAGCAAAGGGTTGTGTTATGTAGAAGCAACAGG
ATACACTTCGGATAGGACTTACCAGCTGGTGGTGGTCTTACCCTCGTAGG
CGAGACATGTTTCCTGTTTGAGAATGAGTAGATGGTTCCTTGGTGTATAT
ATATATCTGGAACCTGGCTGAACACTTTCTCTTCTTTTTATAGCAAACCC
TATAAGGTCCCCTTAACACTCCCCCGATTCTCATTACCCCTCTTAACCTG
TTCTACTGCTTGACGCCATTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_c13.g1 MSMg01no429_c13.g1 CHROMAT_FILE:
MSMg01no429_c13.g1 PHD_FILE: MSMg01no429_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:33 2005
         (145 letters)



>mm_chr5_132902156_132902700
          Length = 545

 Score =  259 bits (134), Expect = 5e-74
 Identities = 140/142 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgtgttactgtgtaagtagtggactgttgaacctcatgctccagtatactggcttca 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaatgcgttactgtgtaagtagtggactgttgaacctcatgctccagtatactggcttca 283

                                                                       
Query: 61  gagaaggggcagctcattacacgctaatgggagtttagtgaaatggatgagtgatcttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gagaaggggcagctcattacacgctaatgggagtttagtgaaatggatgagtgatcttag 223

                                 
Query: 121 acttgattcttaagctgtgaca 142
           |||||||||||| |||||||||
Sbjct: 222 acttgattcttaggctgtgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)