BAC Information

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BAC

Clone NameMSMg01-429O03
Chromosome5 (Build37)
Map Location 27,332,181 - 27,509,065
singlet/doubletdoublet
Overlap geneDpp6, B930011P16Rik
Upstream geneEG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429O03.T7 (MSMg01no429_o03.b1)MSMg01-429O03.TJ (MSMg01no429_o03.g1)
ACCAG522507AG522508
length748748
length of high quality
(start - end)
518 (36 - 553)492 (67 - 558)
definitionCHROMAT_FILE: MSMg01no429_o03.b1 PHD_FILE: MSMg01no429_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:30 2005CHROMAT_FILE: MSMg01no429_o03.g1 PHD_FILE: MSMg01no429_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,332,181 - 27,332,695)(27,508,720 - 27,509,065)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAACA
TTTAATATTAAACAGGTACTGGGCAGTGGTAGTACATACCTTTAATCTCA
GCACTCAGGAGGCAGAGGCAGGAGGGTCTCTGAGTTCAAGGCCAACCTGG
TCTATAGAACAAGTTCTAGACCAGCCCAAGCTGCAGAGAAATCCTGTCTC
AAGAAATATATTATATTTATATTAAACGGGAATTTTAGACAGAACATCCT
TGCCAATGGAGCGTGGATAGTATTTATCAAACACAGTAGGGAAGGATATC
ACTTTACATTACAGAAAGGACAGTCAGATTTCAAATGTTATAATAAATAA
AGTCAGATGGAATACTTCAATCTGTTCAAACCATTTTCTTAAAGAGACTA
CCTCCACTGCTAGATCTTAAGTAGCCGCATCATCTGTCATCTGGAAGCAA
TTCTTCAGGATGGACGGACTTGGCAACCACTCTGGAAAGAAAACCTTGTC
TGCATTTTGCCTTAATGTCCTCTGAGGCCTTCAGTTGTTTTGTGATATTT
TGGNTTTTGTTTTGTTTTTTCCTCTATCTTTTAAAGGCTCCTAACCTATT
GACCTTGATGNTGATGGTTTTGAGTGNTGTCTGGTCTGGGTGGATGGTTG
CGCCCCCTTGCCTGAGCATCTTAGACAGGTTTTCCCCGCTGAAAGTTTTT
TTCTGCTCCCTCATCCCCCACAGCTCGTGCACCTTGAAAAACAATCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGTACAAAGCAGAAAATCGGAGTTCTGTTTCTT
CACTATTAAAATAAGAGTATGCCTTGGAAGGTCTATTCTGGGTCTAACTT
TACAGAACTTAGTGGAGGTTCATTCAAAAAACAGTATGTGGAGCTGGAGA
CACAGCTCATTGGTTAGGACACCCTGCCTGCCAGAGGACCTGAGTTTGGG
TCCCAGCACGGGCAATGCTCAGTTACAAACATTGCTTGTCAACTCCAGCT
GCAGGGCAACCAATATTCTCTGTATGTCCTCCAAGGGTGGACAAACACAC
ACACACACACACACACACACACACACACACACACACACATGCACACACAC
GTGCGCACACACTTCTCCAGCTGTTAATGGATTTGAGAGAAGGGCCAACC
CTTTGAATATAAAAGTAGGAACACAGCCCAAAATGTCTAAACTGCTCTCT
CTAGTGACTGTTATAGACAGGCTACGTCTGGGAGAGGCTATGAAGAGCTG
AGAAGACTGCCGTAAATAACACGTGAAAGCTGGATATTTGGTCTTCATAC
CAGATTTTTTTTCCTACCTCATGTGAAATGACCAGAACATCCACAAAATC
TAAAAGGGACATGTGCATCTTCCCGATATTTCACGCTTCTTTCCCCAGAA
CAAAGAACACAGCTGTTGTTGAATTCCAATGTCCAACAAGGCCTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_o03.b1 MSMg01no429_o03.b1 CHROMAT_FILE:
MSMg01no429_o03.b1 PHD_FILE: MSMg01no429_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:30 2005
         (518 letters)



>mm_chr5_27331978_27332895
          Length = 918

 Score =  949 bits (491), Expect = 0.0
 Identities = 509/515 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaacatttaatattaaacaggtactgggcagtggtagtacatacctttaatct 63
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaacattaaatattagacaggtactgggcagtggtagtacatacctttaatct 263

                                                                       
Query: 64  cagcactcaggaggcagaggcaggagggtctctgagttcaaggccaacctggtctataga 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 cagcactcaggaggcagaggcaggagggtctctgagttcaagtccaacctggtctataga 323

                                                                       
Query: 124 acaagttctagaccagcccaagctgcagagaaatcctgtctcaagaaatatattatattt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaagttctagaccagcccaagctgcagagaaatcctgtctcaagaaatatattatattt 383

                                                                       
Query: 184 atattaaacgggaattttagacagaacatccttgccaatggagcgtggatagtatttatc 243
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 atattaaacaggaattttagacagaacatccttgccaatggagcatggatagtatttatc 443

                                                                       
Query: 244 aaacacagtagggaaggatatcactttacattacagaaaggacagtcagatttcaaatgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaacacagtagggaaggatatcactttacattacagaaaggacagtcagatttcaaatgt 503

                                                                       
Query: 304 tataataaataaagtcagatggaatacttcaatctgttcaaaccattttcttaaagagac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tataataaataaagtcagatggaatacttcaatctgttcaaaccattttcttaaagagac 563

                                                                       
Query: 364 tacctccactgctagatcttaagtagccgcatcatctgtcatctggaagcaattcttcag 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 tacctccactgctagatcttaagtagccgcatcatctgtcatctggaagccattcttcag 623

                                                                       
Query: 424 gatggacggacttggcaaccactctggaaagaaaaccttgtctgcattttgccttaatgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatggacggacttggcaaccactctggaaagaaaaccttgtctgcattttgccttaatgt 683

                                              
Query: 484 cctctgaggccttcagttgttttgtgatattttgg 518
           |||||||||||||||||||||||||||||||||||
Sbjct: 684 cctctgaggccttcagttgttttgtgatattttgg 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_o03.g1 MSMg01no429_o03.g1 CHROMAT_FILE:
MSMg01no429_o03.g1 PHD_FILE: MSMg01no429_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:30 2005
         (492 letters)



>mm_chr5_27508174_27509065
          Length = 892

 Score =  638 bits (330), Expect = 0.0
 Identities = 346/360 (96%), Gaps = 14/360 (3%)
 Strand = Plus / Minus

                                                                       
Query: 133 gacacagctcattggttaggacaccctgcctgccagaggacctgagtttgggtcccagca 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gacacagctcattggttaggacaccctgcctgccagaggacctgagtttgggtcccagca 833

                                                                       
Query: 193 cgggcaatgctcagttacaaacattgcttgtcaactccagctgcagggcaaccaatattc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 cgggcaatgctcagttacaaacattgcttgtcaactccagctgcagggcaaccaatattc 773

                                                                       
Query: 253 tctgtatgtcctccaagggtggacaaacacacacacacacacacacacacacacacacac 312
           ||||||||||||||||||||||||||              ||||||||||||||||||||
Sbjct: 772 tctgtatgtcctccaagggtggacaa--------------acacacacacacacacacac 727

                                                                       
Query: 313 acacacacacatgcacacacacgtgcgcacacacttctccagctgttaatggatttgaga 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acacacacacatgcacacacacgtgcgcacacacttctccagctgttaatggatttgaga 667

                                                                       
Query: 373 gaagggccaaccctttgaatataaaagtaggaacacagcccaaaatgtctaaactgctct 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaagggccaaccctttgaatataaaagtaggaacacagcccaaaatgtctaaactgctct 607

                                                                       
Query: 433 ctctagtgactgttatagacaggctacgtctgggagaggctatgaagagctgagaagact 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctctagtgactgttatagacaggctacgtctgggagaggctatgaagagctgagaagact 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)