Query= MSMg01no429_o03.b1 MSMg01no429_o03.b1 CHROMAT_FILE:
MSMg01no429_o03.b1 PHD_FILE: MSMg01no429_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:30 2005
(518 letters)
>mm_chr5_27331978_27332895
Length = 918
Score = 949 bits (491), Expect = 0.0
Identities = 509/515 (98%)
Strand = Plus / Plus
Query: 4 ggaattccaacatttaatattaaacaggtactgggcagtggtagtacatacctttaatct 63
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaacattaaatattagacaggtactgggcagtggtagtacatacctttaatct 263
Query: 64 cagcactcaggaggcagaggcaggagggtctctgagttcaaggccaacctggtctataga 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 cagcactcaggaggcagaggcaggagggtctctgagttcaagtccaacctggtctataga 323
Query: 124 acaagttctagaccagcccaagctgcagagaaatcctgtctcaagaaatatattatattt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaagttctagaccagcccaagctgcagagaaatcctgtctcaagaaatatattatattt 383
Query: 184 atattaaacgggaattttagacagaacatccttgccaatggagcgtggatagtatttatc 243
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 atattaaacaggaattttagacagaacatccttgccaatggagcatggatagtatttatc 443
Query: 244 aaacacagtagggaaggatatcactttacattacagaaaggacagtcagatttcaaatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaacacagtagggaaggatatcactttacattacagaaaggacagtcagatttcaaatgt 503
Query: 304 tataataaataaagtcagatggaatacttcaatctgttcaaaccattttcttaaagagac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tataataaataaagtcagatggaatacttcaatctgttcaaaccattttcttaaagagac 563
Query: 364 tacctccactgctagatcttaagtagccgcatcatctgtcatctggaagcaattcttcag 423
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 tacctccactgctagatcttaagtagccgcatcatctgtcatctggaagccattcttcag 623
Query: 424 gatggacggacttggcaaccactctggaaagaaaaccttgtctgcattttgccttaatgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatggacggacttggcaaccactctggaaagaaaaccttgtctgcattttgccttaatgt 683
Query: 484 cctctgaggccttcagttgttttgtgatattttgg 518
|||||||||||||||||||||||||||||||||||
Sbjct: 684 cctctgaggccttcagttgttttgtgatattttgg 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_o03.g1 MSMg01no429_o03.g1 CHROMAT_FILE:
MSMg01no429_o03.g1 PHD_FILE: MSMg01no429_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:30 2005
(492 letters)
>mm_chr5_27508174_27509065
Length = 892
Score = 638 bits (330), Expect = 0.0
Identities = 346/360 (96%), Gaps = 14/360 (3%)
Strand = Plus / Minus
Query: 133 gacacagctcattggttaggacaccctgcctgccagaggacctgagtttgggtcccagca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gacacagctcattggttaggacaccctgcctgccagaggacctgagtttgggtcccagca 833
Query: 193 cgggcaatgctcagttacaaacattgcttgtcaactccagctgcagggcaaccaatattc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 cgggcaatgctcagttacaaacattgcttgtcaactccagctgcagggcaaccaatattc 773
Query: 253 tctgtatgtcctccaagggtggacaaacacacacacacacacacacacacacacacacac 312
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 772 tctgtatgtcctccaagggtggacaa--------------acacacacacacacacacac 727
Query: 313 acacacacacatgcacacacacgtgcgcacacacttctccagctgttaatggatttgaga 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acacacacacatgcacacacacgtgcgcacacacttctccagctgttaatggatttgaga 667
Query: 373 gaagggccaaccctttgaatataaaagtaggaacacagcccaaaatgtctaaactgctct 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaagggccaaccctttgaatataaaagtaggaacacagcccaaaatgtctaaactgctct 607
Query: 433 ctctagtgactgttatagacaggctacgtctgggagaggctatgaagagctgagaagact 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctctagtgactgttatagacaggctacgtctgggagaggctatgaagagctgagaagact 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
