Query= MSMg01no430_a21.b1 MSMg01no430_a21.b1 CHROMAT_FILE:
MSMg01no430_a21.b1 PHD_FILE: MSMg01no430_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:43 2005
(436 letters)
>mm_chr5_124834312_124835147
Length = 836
Score = 812 bits (420), Expect = 0.0
Identities = 432/436 (99%), Gaps = 1/436 (0%)
Strand = Plus / Plus
Query: 1 cattaatcaagcccactcctatcagtccttgccgaacgtctgtaagaaaacaaatttatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattaatcaagcccactcctatcagtccttgccgaacgtctgtaagaaaacaaatttatc 260
Query: 61 aaaaatcttcacaatccaaataactcaaggagctgttgatgtagcatgaaggtttaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaatcttcacaatccaaataactcaaggagctgttgatgtagcatgaaggtttaacat 320
Query: 121 acagaggctgggagagatggctctgcaatcaagaacactggtcgctcttccaaaggacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaggctgggagagatggctctgcaatcaagaacactggtcgctcttccaaaggacaa 380
Query: 181 ggcagtgtttaattcagtgcctcaaggccactcataactgaggatctgaggacctttaca 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ggcagtgtttaattcagtgcctcaaggccactcataaccgaggatctgaggacctttaca 440
Query: 241 caaacatacattcaggtctaaatgccattgcacatgttccagcaatgacagacttgatgg 300
|||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 caaacatacattcagg-caaaatgccattgcacatgttccagcaatgacaggcttgatgg 499
Query: 301 gacttttataatagataggtttagtgagtggtacaactgagtgctagacatctgatatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacttttataatagataggtttagtgagtggtacaactgagtgctagacatctgatatag 559
Query: 361 taggcccaaaaccattttcaatcctaagaactgaaagaccaaagagacagagagaggaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taggcccaaaaccattttcaatcctaagaactgaaagaccaaagagacagagagaggaat 619
Query: 421 atgtgtggtctccaac 436
||||||||||||||||
Sbjct: 620 atgtgtggtctccaac 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_a21.g1 MSMg01no430_a21.g1 CHROMAT_FILE:
MSMg01no430_a21.g1 PHD_FILE: MSMg01no430_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:43 2005
(404 letters)
>mm_chr5_125033786_125034588
Length = 803
Score = 727 bits (376), Expect = 0.0
Identities = 397/404 (98%), Gaps = 1/404 (0%)
Strand = Plus / Minus
Query: 1 ataagaatcttgcactttaaaaacatacaccaattcccaccacatggagactgcagtgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 603 ataagaatcttgcactttaaaaacatacaccaattcccaccacatggagacagcagtgac 544
Query: 61 aatagccaggctcttactcttggtcatcagatccttgatctcctcagcgatcacctcgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aatagccaggctcttactcttggtcatcagatccttgatctcctcagcgatcacctcgtt 484
Query: 121 tgcggctgtcaacagctcgtatttcccatctttactcccagaggggttacagtcggggag 180
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgcaactgtcaacagctcgtatttcccatctttactcccagaggggttacagtcggggag 424
Query: 181 cgcattgccagggtctccgaagaagtctccaagtctgccgttcttccccgggtataagaa 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 423 cgcattgccagggtctccgaagaagtctccaagtccaccgttcttccccgggtataagag 364
Query: 241 ccggctgagggggtaggagaaagatcctctgagtaaccggaaggtgctctacccatgcat 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ccggctgaggggg-aggagaaagatcctctgagtaaccggaaggtgctctacccatgcat 305
Query: 301 gcaactgttaaaggactgaaaagcagcctctggcccctacctttcctgaatgtgactggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gcaactgttaaaggactgaaaagcagcctctggcccctacctttcctgaatgtgactggc 245
Query: 361 gatgacagccagctggttggagcggttcatgaacaggtgagaat 404
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gatgacagccagctggttggagcggttcatgaacaggtgagaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 803
Length adjustment: 9
Effective length of query: 395
Effective length of database: 794
Effective search space: 313630
Effective search space used: 313630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
