BAC Information

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BAC

Clone NameMSMg01-430F17
Chromosome5 (Build37)
Map Location 82,104,926 - 82,105,339
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430F17.T7 (MSMg01no430_f17.b1)MSMg01-430F17.TJ (MSMg01no430_f17.g1)
ACCAG522870AG522871
length7601,029
length of high quality
(start - end)		425 (43 - 467)---
definitionCHROMAT_FILE: MSMg01no430_f17.b1 PHD_FILE: MSMg01no430_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:10 2005CHROMAT_FILE: MSMg01no430_f17.g1 PHD_FILE: MSMg01no430_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCTTGATTTTTCTCCTCCTAATGTACTCCCATAAGGGTACTCA
CTTGATTTTTCTTCCACCAGTTAACACTTATTTCTGTGCTTCCTCAACAG
TTCCTCCATTTTTTCCCAAACTACTAAGGTTGGGGCACTTCCTAGCCTAA
TGATTTATGGCCTTTTCTTTGAGTGGTTCCTATGGTGACCTCATTATTTT
AGATCAGTGTGATCTTGATGCCTATGATCAGAAATGTTACTCCTTGAACA
GACCATTCTTTTGAACTTAAGAATTACTGTTTCTTTAAGTGTTTCAGCAT
CTCCCTTTGTTGCACATTAGGCAGCATGAAAAAAAAATCTATCCCATAAC
TGAATTTTGCACCTTTATTTTTAAGTTCTGTCTCCACTTCCACAGTTGGT
GAGTTTCATTCCCATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCGGGCTGTCCT
TTAGCCTTACCACCTTCATAACTACTTGCCTGGTTATAAAACGCCTCTCC
CATATCGGTA

CCCAAACGGAGAAATAGACAAGGGAGGAAGGAAGAAAGGNTTTCAAAAAA
AAAGGGGGAGGGNNGGGGGTTTTTCCAAAAAAAAAGAGGAAAGGGAAGAC
AAAAAAAAAGAGCAGAGACGAAGAAAGAAANGGCGGGTGGACACACATTT
ATATATTAGTGTGTGAGAAGTAGACGGCGTGCGTCGCAGGTCTTTACCTA
GAAGAGAGAGGGAATAGTCTGCAAAAGGTGCAGTATACATATGGCAAGCT
ACAACAAGGAATGATAAGACTACAAGAAAAAAAACACGCAGAATCATAGA
CAAAACCAATTTTTTTAAACATCTGTATAAAATTCAGCCTAAAAAATAAC
GAAACGACAACAAAATTAAGTAAAAAGACGAAAAAAATCAAGCAAGAGCG
TTTTTTTTTTTTATTAACCCGTTATACACACTAAAGACGTAGTATAACGA
GCGTAACCTTTTTGTCTTTCCCTCCTGTGCCTGAACTTTACCCAGGAATA
TAATACTACTCCGATATTTAGATTACTATGAAATATAAGACATCCAACAA
CCCCCAATCAATATTTTATGCAACAGACAGAATAAAAGAAAAATACGCCA
ACAAAGAATTATATAAAAAAAAAGAAGTAAACATATTAAACCTCCGTATC
TAATCATATTATTCACGAATTGCATATTATATACCATATAATATACAATT
ACAACAAATACATCTACGTAAAAGAAAGATAAAATTTATCTATGCGCCCA
GAACTAACCTTGGATCTATCTCCACACCAACACTATTCTCATTCTAATAA
CATATCACAATATAATGCAAAAAAAAAATAAGAATAATAACCTATATATA
AAAAACAAATTACTACCCTTACATATCATCCATACATTATAGCACTAACA
TCTATCAGCCTTCAATCACATTATCATATCACGTTCCAAATCTAATGTAT
CTATATAAGCTGAATTGTAATAAAAAAATATAAACAAATGCATTTACAAA
CAAAGTATTAGATAACATTATAAACAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_f17.b1 MSMg01no430_f17.b1 CHROMAT_FILE:
MSMg01no430_f17.b1 PHD_FILE: MSMg01no430_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:10 2005
         (425 letters)



>mm_chr5_82104715_82105539
          Length = 825

 Score =  702 bits (363), Expect = 0.0
 Identities = 402/415 (96%), Gaps = 2/415 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattcttgatttttctcctcctaatgtactcccataagggtactcacttgatttttctt 71
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcttgatttttttcctcctaatgtactcccataagggtactcacttgatttttctt 271

                                                                       
Query: 72  ccaccagttaacacttatttctgtgcttcctcaacagttcctccattttttcccaaacta 131
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 272 ccaccagttaacacttatttctgtgcttcctcaacagttcctcca-tttttcccaaacta 330

                                                                       
Query: 132 ctaaggttggggcacttcctagcctaatgatttatggccttttctttgagtggttcctat 191
            |||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct: 331 ttaaggttggggcacttcctagcctaatgcttaatggtcttttctttgagtggttcctat 390

                                                                       
Query: 192 ggtgacctcattattttagatcagtgtgatcttgatgcctatgatcagaaatgttactcc 251
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 391 ggtgacctcgttattttagatcagtatgatcttgatgcctatgatcagaaatgttactcc 450

                                                                       
Query: 252 ttgaacagaccattcttttgaacttaagaattactgtttctttaagtgtttcagcatctc 311
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 451 ttgaacagaccattcttttgaactcaagaattactgttcctttaagtgtttcagcatctc 510

                                                                       
Query: 312 cctttgttgcacattaggcagcatgaaaaaaaaa-tctatcccataactgaattttgcac 370
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 511 cctttgttgcacattaggcagcatgaaaaaaaaaatctatcccataactgaattttccac 570

                                                                  
Query: 371 ctttatttttaagttctgtctccacttccacagttggtgagtttcattcccatat 425
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 571 ctttatttttaagttctgtctccacttccacagttggtgcgtttcattcccatat 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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