BAC Information

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BAC

Clone NameMSMg01-430I05
Chromosome5 (Build37)
Map Location 118,860,752 - 118,861,082
singlet/doubletsinglet
Overlap genenone
Upstream geneKsr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
Downstream geneLOC665162, Thrap2, LOC100039488, EG665194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430I05.T7 (MSMg01no430_i05.b1)MSMg01-430I05.TJ (MSMg01no430_i05.g1)
ACCAG522990AG522991
length776784
length of high quality
(start - end)
140 (146 - 285)331 (83 - 413)
definitionCHROMAT_FILE: MSMg01no430_i05.b1 PHD_FILE: MSMg01no430_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:24 2005CHROMAT_FILE: MSMg01no430_i05.g1 PHD_FILE: MSMg01no430_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCTTATAGTTGGCGGCGCTAATAGACTGCCTATTCGAAGAGGATCCG
CGGAATTCCTTGTTTTCCCAAAACAAAGTTACTTCTTCAAGAAACAAAAC
CTCAAGTGAGCTAGCACCTAGCAGAGTTTCAAAGCAGCAAGCAAAGGCCA
TGAGAGAGCAAGTGCACATGGAGGAGACCAGGAGGTTGGTCTTCTCAGCA
CTGGTAGACAGAAAGGCACTATGGTGAGAGCTGTGAGCAGCTACTGCTAA
CCAATGAGCCAGGGCAGGTATAAACATTTCTATCCCATCAGCATCAGAAC
ATATTAGTTTTAAATGACATTTTTTTCTCACCCTAAGAACCATGTGTTGA
GCCAAATACACACTAAGATGCTGTCAACAATTTATAACTCTGAACAACTC
TCAGTTAGAAATTATTACCACCTTCTACTTAACCTGCAATGCCTCTACTT
CCTGCACTTATCTGTTTTCTTTTCTTCCTTCCATTCTTTGTCCCTACACT
CTAACCCTTTTGACCTGATGCCCGACCCCTTTACTCCTCCTTGTGTTTTC
ACTCACTCCTTTATTACGCCTTTGACATTTCCTCTCTTTTTCCCCCCCCC
CTCTTTCTCGTTTTCGTCCTATTTCACGCCTTCTACCTTTTCTTCCTCTC
CTTTCTCCTACTCCTTCCTTATTTTTTCATATCCCGCTTTTTCCCCCTTT
TACCACCGTACCATGACATCCGGTCCGTTTTTTTTCCCCTTTTTATATTT
CTCATTTTAACATCCCTGTACTAACG
TTGCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTAGACCAGGCTG
GCCTTGAACTCACCATCCCCTTGCTTCTGCCTCCCGAGTGCTGGGATTAA
AGGCATGCGCCACCACACCTGGCTCTATTTTCTAGTCTTTAAATTTAGTT
CGTAGTCATTCATTGGCATACTTTTCAGCAAAAGGCAGGGTTTGCACTCA
TAGGTGTGTCAGAAAACACATGAAGATCAGAGGACAGCTTGCACAAGCCA
GTTATCAGGCTTGGCGGCAAGCAACCTTCTTGCTGAGCCATCTTGCTGGC
CTTGGAATTTTATTAATTTATTTTTGAGACAGGTCCTCAAGTGATCCAGG
CTCACCTCTAATTCAGCAACTAACAAGGGATGTCCTTGAGCTCCTGATCC
TCCTGTCTCCACCTCTCCAAGTCCTGGTATTACAATTGTAACATCCCGGG
CCCCCGCGGCATTATGCCCTTTGTCTATTAGACATATGTCTCCAGGATTA
TTTATTCCCCCGGGTGTTTATGCTTTTTATACCTCCCTTTTTTTCTACCT
TTTTTTTCTTTATCCCTCTACCCACCTTTTATATGTAATCACCCTTCTAT
ACATCTTATTACATCTTTTTCTCCTTATCCTTTCTTCATTTTTGCTTCTA
TCTTTATTTCCTAGTCCTGCCTATCTCTTAAAATTCCTTTATACACATAT
ATTCTTCCTATCCTATGCCATTTTTCTATTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_i05.g1 MSMg01no430_i05.g1 CHROMAT_FILE:
MSMg01no430_i05.g1 PHD_FILE: MSMg01no430_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:24 2005
         (331 letters)



>mm_chr5_118860552_118861282
          Length = 731

 Score =  594 bits (307), Expect = e-174
 Identities = 325/331 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctgtagaccaggctggccttgaactcaccatccccttgcttctgcctcccgagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgtagaccaggctggccttgaactcaccatccccttgcttctgcctcccgagtgct 260

                                                                       
Query: 61  gggattaaaggcatgcgccaccacacctggctctattttctagtctttaaatttagttcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 261 gggattaaaggcatgcgccaccacacctggctctattttctagtctttaaatttaattca 320

                                                                       
Query: 121 tagtcattcattggcatacttttcagcaaaaggcagggtttgcactcataggtgtgtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcattcattggcatacttttcagcaaaaggcagggtttgcactcataggtgtgtcag 380

                                                                       
Query: 181 aaaacacatgaagatcagaggacagcttgcacaagccagttatcaggcttggcggcaagc 240
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 381 aaaacacatgaagatcagaggacagcttgtacaagtcagttatcaggcttggcggcaagc 440

                                                                       
Query: 241 aaccttcttgctgagccatcttgctggccttggaattttattaatttatttttgagacag 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctccttgctgagccatcttgctggccttggaattttattaatttatttttgagacag 500

                                          
Query: 301 gtcctcaagtgatccaggctcacctctaatt 331
           | |||||||||||||||||||||||||||||
Sbjct: 501 ggcctcaagtgatccaggctcacctctaatt 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)