BAC Information

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BAC

Clone NameMSMg01-430I19
Chromosome5 (Build37)
Map Location 23,019,202 - 23,159,046
singlet/doubletdoublet
Overlap geneSrpk2
Upstream geneOrc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430I19.T7 (MSMg01no430_i19.b1)MSMg01-430I19.TJ (MSMg01no430_i19.g1)
ACCAG523018AG523019
length773801
length of high quality
(start - end)		271 (50 - 320)357 (81 - 437)
definitionCHROMAT_FILE: MSMg01no430_i19.b1 PHD_FILE: MSMg01no430_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:27 2005CHROMAT_FILE: MSMg01no430_i19.g1 PHD_FILE: MSMg01no430_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,158,781 - 23,159,046)(23,019,202 - 23,019,558)
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAAAACCTTGCAGACTTATCCTTACAATTTCGGTTCCAGC
TGTTTACGTTAGTAGTTCTATTTTCAGCCCACTTTGTGTGTTGTCTTAGC
AACATTGTCTGTTTTTTTCTACTGAATAGACGTAGGTATAAGCTTTTAAG
ATGGAGTTTCTCTGTGTATTCCTGGCTATCCTGAAACTCACTCTGTAGAC
CAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCT
GGGATTAAAGGCATGTGCCTCCACTGTCTGGTCTTGAGGGCCATTGTGTA
GCTTCTGATGGGAGATAAGCTTTTGTAATATTTTTGTGAAATTAGTTTAA
AAGCTAAAATAATTAAATGGTAAAAATATTACTGATTTTTATCTCGACTA
TAAGATATATTTAACTTGCTTATTGGCTTTCATTGTGGTAGAAGTAACCT
TACTGGTTGCTATTTGTGAGAATTTGCGTTTTAATCCCATGATAGTACTA
ATTTTTGTTTTGTAAATAGGCTCCCAGCTGGCTCCTTATTTTTTTGACCT
GTAAATGACACTCCCTCTTTTTCCTTTGTTTTATTTTTTTTCACCCTTTG
CCCTATTCATACTCTTTTTTTCCTTTGCCATACTTTTCTTCTTTCCCCTT
TATCCCCCTTTTCACCCTCCCTCCTTCTCCTCCTTTTTATCTCCCTTCTT
TTTCCTTATTCCCACCTTATCTC

NGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGTTGAAAAGTCTTGAT
CTTTTCCACGGCTCAAATATGAATGCACAATTTCTCCTTTTGGGAGAAGA
TCGTGCTGAAAATGCGTGCTGCGGAAGTACCGTTACCTTTTCTGGTGAAA
AACTCCTTGGAATATTTCCCCAACATAGCGTATTTTCGAGGGACTTTCCC
CAGCAGTTCAATGATCAATGCTATGTGATCTGCATTGGGAAACATTGCCA
GCAAAACAGAAACACACGACAGTTTAATCAGTACCCTGCATGCAGACATG
GTTACTGCCCGCACAGACAGAAACGGAGCACGACCGGAATGGCCTTTGTC
CAGCTGATTCACAACTCAAAGCTAAGGGCACCCAGCTGTCCCTGGGCACC
AAGAAAGCCCCAGTGTACAGAGTGCATACACCACCACCCCAGACTTAGCC
TTTCGGGTGGTCAGCACTTTATCTTTTACGAACTTTTTTGTCCTCTGGTC
TGTAATATACAAAAAATTGTTTGCATTCCTTTTACCTGTTTGTTCTCTTC
CCTTTTCTCTTTTCTTTGCTTTACTTATGATCACCTCCTCCCATTCTGAT
TTCCATCTTCTTCTTATCTCCTTTATCTCTCATATTCCAACTCCTCTATA
TTGATTATTGTTATAAGCTCCACTTTCCTCCTCCTATTATTTTTTTTACT
TCTTTAATTCACGATTTTAGTGATCCCCCCCCTATCTTTCACCCTTATAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_i19.b1 MSMg01no430_i19.b1 CHROMAT_FILE:
MSMg01no430_i19.b1 PHD_FILE: MSMg01no430_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:27 2005
         (271 letters)



>mm_chr5_23158703_23159373
          Length = 671

 Score =  499 bits (258), Expect = e-146
 Identities = 264/266 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataaaaccttgcagacttatccttacaatttcggttccagctgtttacgttagt 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaattcataaaaccctggagacttatccttacaatttcggttccagctgtttacgttagt 285

                                                                       
Query: 65  agttctattttcagcccactttgtgtgttgtcttagcaacattgtctgtttttttctact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agttctattttcagcccactttgtgtgttgtcttagcaacattgtctgtttttttctact 225

                                                                       
Query: 125 gaatagacgtaggtataagcttttaagatggagtttctctgtgtattcctggctatcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gaatagacgtaggtataagcttttaagatggagtttctctgtgtattcctggctatcctg 165

                                                                       
Query: 185 aaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctccc 105

                                     
Query: 245 gagtgctgggattaaaggcatgtgcc 270
           ||||||||||||||||||||||||||
Sbjct: 104 gagtgctgggattaaaggcatgtgcc 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no430_i19.g1 MSMg01no430_i19.g1 CHROMAT_FILE:
MSMg01no430_i19.g1 PHD_FILE: MSMg01no430_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:27 2005
         (357 letters)



>mm_chr5_23019002_23019758
          Length = 757

 Score =  690 bits (357), Expect = 0.0
 Identities = 357/357 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccagttgaaaagtcttgatcttttccacggctcaaatatgaatgcacaatttctccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagttgaaaagtcttgatcttttccacggctcaaatatgaatgcacaatttctccttt 260

                                                                       
Query: 61  tgggagaagatcgtgctgaaaatgcgtgctgcggaagtaccgttaccttttctggtgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggagaagatcgtgctgaaaatgcgtgctgcggaagtaccgttaccttttctggtgaaa 320

                                                                       
Query: 121 aactccttggaatatttccccaacatagcgtattttcgagggactttccccagcagttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactccttggaatatttccccaacatagcgtattttcgagggactttccccagcagttca 380

                                                                       
Query: 181 atgatcaatgctatgtgatctgcattgggaaacattgccagcaaaacagaaacacacgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgatcaatgctatgtgatctgcattgggaaacattgccagcaaaacagaaacacacgac 440

                                                                       
Query: 241 agtttaatcagtaccctgcatgcagacatggttactgcccgcacagacagaaacggagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttaatcagtaccctgcatgcagacatggttactgcccgcacagacagaaacggagca 500

                                                                    
Query: 301 cgaccggaatggcctttgtccagctgattcacaactcaaagctaagggcacccagct 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgaccggaatggcctttgtccagctgattcacaactcaaagctaagggcacccagct 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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